Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01157 ATGGAATACCCTCCATCATATAGCTTCGCTTCCTCTTCTCACTCCTCCCACCATCAACCAGGCTCAACATCCCTCTCTTCACAACGCAGCCTTATCTCAGTTCCATCCCTCAACTCTTCCACCACCACCGCCACCACCTTCCACCAGTGCCTAACCACCCTCAAGGGCCATACCTCGCACATCTCCTCCCTAACTCTCTCCGGTAAATTCCTTTATACAGGCTCCTCCGACAGGGAAATCAGGTCCTGGAACAGAACCCCTCTCAACTCCCACCCTCAGAACTCCATTCTGGCCGGGAACGGCGCCGTTAAGTCCTTGATTATTCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAACACCAACAACAACGGTAAACACGAACACGAAGTTGACGACCATAAGAAATACACGCACGTGGCCACACTCCCGACCCTGGGAGACCGCGCCTCGAAGGTTCTGATTCCGAAGAACCATGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTTCATCACGTGGACACGGTGTCCGCGCTGGCCCTGTCGAAAGACGGGAGCTTGCTGTACTCGGTTTCGTGGGACAGGAGCATAAAAATCTGGAGAACGAAGGACTTCGCGTGCCTGGAGTCTGTGACGAGCGCACACGAGGACGCCATAAACGCGGTGGCGGTATCTTACGATGGACGCGTGTACACGGGATCAGCAGACAAGAGAATAAAGGTGTGGAGGAAGGAGGAAGGGGAAGGAAAACACAGGCTGGTGGAAAGTTTGGAGAAGCATAAGTCCGGGGTGAATGCGTTGGCTCTGAGCAGTGACGAGAGGCATTTGTATTCGGGTGCATGCGATAGATCGGTGTTGGTTTGGGAGACACAGGGAGAGAGAATGGGGTTGGTGGGTGCGTTGAGGGGCCACACAAAATCCATTTTGTGTTTGGCTGTGGTGGGCGATTTGGTGTGCAGTGGGTCTGCCGATAAAACCATAAGAATTTGGCGAGGCTTTCATGCACAATACTCTTGTTTAGCTGTTTTGGAAGGACACGGTGGTTCGATCAAGTGCTTAACTGCCGTGCTTGACCACTGTAACCCTTCCCACTCTCAGACATCTTTTCTACTCTACAGTGGCTCTTTGGACTGCGACATTAAGGTTTGGCAGATTTTAGTTCCTTCTTCTATCTGA 1206 0.5216 MEYPPSYSFASSSHSSHHQPGSTSLSSQRSLISVPSLNSSTTTATTFHQCLTTLKGHTSHISSLTLSGKFLYTGSSDREIRSWNRTPLNSHPQNSILAGNGAVKSLIIQSNKLFSAHQDHKIRVWKISNTNNNGKHEHEVDDHKKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGSLLYSVSWDRSIKIWRTKDFACLESVTSAHEDAINAVAVSYDGRVYTGSADKRIKVWRKEEGEGKHRLVESLEKHKSGVNALALSSDERHLYSGACDRSVLVWETQGERMGLVGALRGHTKSILCLAVVGDLVCSGSADKTIRIWRGFHAQYSCLAVLEGHGGSIKCLTAVLDHCNPSHSQTSFLLYSGSLDCDIKVWQILVPSSI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 210 - -
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 54 84 - -
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 340 - -
Vimu10g01157 401 Gene3D - 25 152 IPR015943 GO:0005515
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 340 IPR001680 GO:0005515
Vimu10g01157 401 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 395 IPR045182 -
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 299 IPR001680 GO:0005515
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 84 IPR001680 GO:0005515
Vimu10g01157 401 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Vimu10g01157 401 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Vimu10g01157 401 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Vimu10g01157 401 SUPERFAMILY WD40 repeat-like 48 395 IPR036322 GO:0005515
Vimu10g01157 401 CDD WD40 50 394 - -
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 252 - -
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 262 IPR001680 GO:0005515
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Vimu10g01157 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Vimu10g01157 401 SMART WD40_4 346 394 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 214 253 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 304 341 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 89 126 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 47 84 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 172 211 IPR001680 GO:0005515
Vimu10g01157 401 SMART WD40_4 260 299 IPR001680 GO:0005515
Vimu10g01157 401 MobiDBLite consensus disorder prediction 1 30 - -
Vimu10g01157 401 Gene3D - 168 398 IPR015943 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 49 84 IPR001680 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 348 393 IPR001680 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 265 298 IPR001680 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 180 210 IPR001680 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 308 340 IPR001680 GO:0005515
Vimu10g01157 401 Pfam WD domain, G-beta repeat 222 252 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01157 Vimu-Chr10 11186698 11188854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01157 172 395 Miscellaneous Gene Families AT5G08390 23.684 1.10e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01157 - - gmx:100777242 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03810 7 33911124 33912365 Vimu10g01157 10 11186698 11188854 ECH
Vimu10g01157 10 11186698 11188854 Vimu10g01157 10 11186698 11188854 ECH
Vimu7g03810 7 33911124 33912365 Vimu10g01157 10 11186698 11188854 PCT