Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03741 ATGATCCGGGCAATTCGTGCTTGCAAGACTGCAGCAGAAGAACGGGCTGTTGTAAGAAAAGAGTGTGCTGCCATTCGTGCAGCAATAAATGAAAATGATACTGATTATCGGCATAGAAATCTGGCTAAGCTAATGTTCATCCACATGCTTGGTTACCCCACACATTTTGGTCAAATGGAATGCCTCAAGTTGATAGCATCTCCTGGATTTCCGGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTGGATGAAAGACAAGAAGTTCTCATGTTGGTCACCAATTCTTTGAAACAGTATCCAGTTGTTAGAAACATTTGTTCAGCGGAAATGGCACGTGATCTTGCACCAGAGGTTGAGAGATTATTGCAATTTCGAGATCCAAATATTAGGAAGAAGGCAGCATTATGCTCTATAAGGATCTTAAAGAAAGTTCCAGACTTGGCGGAAAATTTTATCAATCCTGCTACTGCCTTACTCAGGGAGAAGCATCATGGGGTTTTGATTACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAATTAGCACTGAAGCTCTTGAAAATATTAGGAAGAAATGCACAGATGGTTTGGTCAGAACTCTTAAGGATCTAGCAAATAGTCCATATTCACCAGAGTATGATATTGCTGGTATCACAGACCCATTTCTCCATATCAGATTGCTTAAACTTTTGCGAGTGCTGGGTGAAGGTGATGCTGATGCTAGTGACAGCATGAATGACATACTTGCCCAGGTGGCTACTAAGACCGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAATGTGTTCAAACAATAATGAGCATTGAAGATAATGGCGGCTTACGTGTACTAGCCATTAATATCCTGGGAAGATTCTTGTCAAACCGTGACAACAATATCAGATATGTGGCATTAAACATGCTAATGAAGGCTGTAACAGCTGATGGTCAGGCGGTACAGAGGCACCGTGCAACAATTTTAGAGTGTGTGAAGGATTCAGATGCTTCGATTCGGAAAAGAGCCCTTGAACTTGTTTATGTTCTGATCAATGATACTAATGTGAAGCCCTTGGCGAAAGAACTAATAGATTATCTTGAAGTCAGTGATCAGGATTTCAGAGCTGACCTTACTGCGAAAATTTGCTCCATTGTAGCAAAAGGAACATGCTTTACTGGCATTAGTTCTTTAGAAGATATAACTGTTTCTCACGTTGGTAGTTGTGAACATATTTCCTATGTCGGCCTTGCAGCTGGAAATTTTGTAAAAGATGAGGTATGGTATGCCTTAATTGTTGTGATAACCAATGCTTCTGAGCTTCATGGATATACCGTAAGAGCATTGTACAGAGCATTTCAAACGTCAGCTGAACAGGAGACTCTAGTTCGAGTTACAGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTCCATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAGTGACTGAGTCTGATGCAGTTGACATTGTAGAGATTGCCATCAACCGTCATGCATCAGATCTTACCACAAAAGCGATGGCTTTGGTTGCATTATTAAAACTCTCTTCACGTTTCCCTTCATGTTCAGAGAGGATCAGAGAAATTATTGTTCAGTTCAAAGGGAGCTTTGTGCTAGAATTGCAGCAGAGAGCTATTGAATTCAATGCGATTATTGCAAAGCACCAAAATATTAGGTCTACTCTTGTGGAAAGGATGCCAGTTTTGGATGAAGCAGCCTTTATTGGTAGGAGGGCTGGGTCTCTGCCAGGTGCAGCTTCAACTACAACTGTACCATCAGTTAGTCTACCAAATGGTGTTGCCAAACCTGTGGCTCCTCTTGTAGATCTACTTGATCTAAGTTCAGATGATACTCCTGCACCTAGCTCTTCTGGTGGAGATTTTCTTCAGGACCTTTTGGGTGTTGATCTTGCTCCAGCATCACAACAATCTGCAGCTGGCCAAGCTTCAAAAAGTGGCAATGATGTTCTTTTGGACCTTTTGTCTATTGGATCACCTTCCCAAACCAGCTCATCTACAGTGGACATCATATCCTCCAATTCTAGTAACAAAGCACCAGTTTTACCATTGGATGATCTCTCATCTGTTTCACTTTCCTCAAAAGCATCTTCGAATGCTGCTCCTATGATGGATTTATTAGATGGTTTTGCCCCCAGCCCACCTACAGAAAACAATGGACCGGTTTATCCATCTATAACTGCGTTTGAGAGCAACTCCTTGAGATTGACATTCAATTTCTCAAAACAACCAGGAAGCCCACAAACTACAGTTATCCAGGCTACATTTACGAATTTGACCTCTAATACATATACAGATTTTGTTTTCCAGGCAGCTGTTCCCAAGGATATTGACGCCACACTCAAGAGAGATGAGGAGGTGAGTCATGAAGATGATTGTCACATATTGCCCTAA 2445 0.4151 MIRAIRACKTAAEERAVVRKECAAIRAAINENDTDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQYPVVRNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRILKKVPDLAENFINPATALLREKHHGVLITGVQLCTDLCKISTEALENIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAVTADGQAVQRHRATILECVKDSDASIRKRALELVYVLINDTNVKPLAKELIDYLEVSDQDFRADLTAKICSIVAKGTCFTGISSLEDITVSHVGSCEHISYVGLAAGNFVKDEVWYALIVVITNASELHGYTVRALYRAFQTSAEQETLVRVTVWCIGEYGDMLVHNVGMLDIEDPITVTESDAVDIVEIAINRHASDLTTKAMALVALLKLSSRFPSCSERIREIIVQFKGSFVLELQQRAIEFNAIIAKHQNIRSTLVERMPVLDEAAFIGRRAGSLPGAASTTTVPSVSLPNGVAKPVAPLVDLLDLSSDDTPAPSSSGGDFLQDLLGVDLAPASQQSAAGQASKSGNDVLLDLLSIGSPSQTSSSTVDIISSNSSNKAPVLPLDDLSSVSLSSKASSNAAPMMDLLDGFAPSPPTENNGPVYPSITAFESNSLRLTFNFSKQPGSPQTTVIQATFTNLTSNTYTDFVFQAAVPKDIDATLKRDEEVSHEDDCHILP 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03741 814 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 738 814 IPR008153 -
Vimu7g03741 814 FunFam AP-1 complex subunit gamma 1 581 - -
Vimu7g03741 814 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 800 - -
Vimu7g03741 814 PIRSF AP1_gamma 1 809 IPR017107 GO:0005794|GO:0016192|GO:0030121
Vimu7g03741 814 SUPERFAMILY Clathrin adaptor appendage domain 714 798 IPR013041 -
Vimu7g03741 814 Gene3D - 1 581 IPR011989 -
Vimu7g03741 814 SUPERFAMILY ARM repeat 13 579 IPR016024 -
Vimu7g03741 814 Gene3D - 738 804 - -
Vimu7g03741 814 Pfam Adaptin N terminal region 105 565 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu7g03741 814 Pfam Adaptin N terminal region 15 100 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vimu7g03741 814 SMART alpha_adaptinc2 735 814 IPR008152 GO:0006886|GO:0016192
Vimu7g03741 814 Pfam Adaptin C-terminal domain 741 799 IPR008152 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03741 Vimu-Chr7 32836625 32849636 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03741 K12391 - gmx:100802164 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03741 7 32836625 32849636 Vimu7g03741 7 32836625 32849636 ECH
Vimu7g03741 7 32836625 32849636 Vimu11g03276 11 52980320 52983351 PCT