Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03734 ATGGCTGCGGAGAACAACAACAACGTGGTTCAGGTTTCAGACTTTCCCGTCAAGAGACCCAGAGAAGAAGAACAAGACGCCGGACAAAATGGCGTTCCCGACACCCTTTCAACGCAACCCAATCACTCTCAACACTCTGGTATCTCTCCGGTTATTCCTGGTTGGTTCTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCGCATTCTTTGAAGGTGGAAAAGGTTCTGTTTGAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCGTCCACCTATGGCAAGGTTCTTGTTCTTGATGGGGTCATTCAGCTTACAGAGAGGGATGAGTGTGCCTACCAAGAGATGATAACACATCTTCCTCTTTGCTCTATTCCAAAGCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGTGAAATAGCACGCTATTCCTCAGTAGAGAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGAGGTCTCCAAACAATTTTTTCCAGATGTAGCTGTAGGTTTCGAGGATCCACGTGTGACACTTAATATTGGTGATGGAGTTGCATTTTTGAAGGCTGTTGAAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCCGATCCTATTGGTCCTGCTCAAGAACTGTTTGAAAAGCCATTTTTCGCATCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGGATATCATTGAGGGCATTGTGGCCAATTGTCGTCAGATATTCAAAGGTTCTGTCAACTATGCATGGACCACTGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGTTCAACTGAGGGTCCAACTGTGGACTTCTTGAATCCAGTGTATTCTATAGATGAGGATGATAGTCAAACTAGACCATTGAAATTTTACAACTCTGAGCTTCATTCTGCGGCTTTCTGTTTGCCATCTTTTGCCAAGAGGGCTATTGGTTCTAAAGCAAAGTGA 1026 0.4454 MAAENNNNVVQVSDFPVKRPREEEQDAGQNGVPDTLSTQPNHSQHSGISPVIPGWFSEISPMWPGEAHSLKVEKVLFEGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPKPKKVLVIGGGDGGVLREIARYSSVEKIDICEIDKMVVEVSKQFFPDVAVGFEDPRVTLNIGDGVAFLKAVEEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMDIIEGIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFLNPVYSIDEDDSQTRPLKFYNSELHSAAFCLPSFAKRAIGSKAK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03734 341 Hamap Polyamine aminopropyltransferase [speE]. 54 337 IPR001045 GO:0003824
Vimu7g03734 341 MobiDBLite consensus disorder prediction 1 47 - -
Vimu7g03734 341 MobiDBLite consensus disorder prediction 30 47 - -
Vimu7g03734 341 PIRSF Spermidine_synth 42 341 IPR030668 GO:0006595
Vimu7g03734 341 Gene3D Spermidine synthase, tetramerisation domain 35 107 IPR037163 -
Vimu7g03734 341 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Vimu7g03734 341 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Vimu7g03734 341 FunFam Spermidine synthase 1 106 341 - -
Vimu7g03734 341 FunFam Spermidine synthase 1 46 105 - -
Vimu7g03734 341 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Vimu7g03734 341 PANTHER SPERMIDINE/SPERMINE SYNTHASE 45 338 IPR001045 GO:0003824
Vimu7g03734 341 NCBIfam spermidine synthase 55 331 IPR001045 GO:0003824
Vimu7g03734 341 Pfam Spermine/spermidine synthase domain 111 297 - -
Vimu7g03734 341 CDD AdoMet_MTases 131 242 - -
Vimu7g03734 341 Gene3D Vaccinia Virus protein VP39 108 341 IPR029063 -
Vimu7g03734 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 336 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03734 Vimu-Chr7 32653089 32655784 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03734 K00797 - gmx:100792107 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03734 7 32653089 32655784 Vimu7g03734 7 32653089 32655784 ECH
Vimu7g03734 7 32653089 32655784 Vimu11g03253 11 52641091 52644718 PCT