Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03253 ATGGCGGATGAGAGCGTTGTCGAGTCCCCGGTGAAGAGGCAGAGAGACGATGAAGAAAATGGGGTCTCCGTTTCCATGGATACGGAGGGTGGCAAAGACCCACAGGGTAATGGTTTATCGTCTGTGATTCCTGGCTGGTTCTCTGAAATCAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAAAAAATTTTGTTTCAAGGAAAGTCTGAATACCAAAATATCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGATGGAGTAATCCAGTTAACAGAGAGAGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGAGGAGGTGATGGAGGGGTCCTCCGAGAAATAGCACGCCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAGTATGGTTGTTGATGTTTCCAAACAATATTTCCCTGATGTTGCTGTAGGGTATGAGGATCCTCGTGTGACACTTACTGTTGGTGATGGAGTTGCGTTTCTGAAAAATGTTCCAGAAGGAATGTATGATGCCATTATAGTAGATTCATCCGACCCTATTGGTCCTGCTCAGGAGTTATTTGAAAAGCCCTTCTTCGCGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTTTGTGTACTCAGGCAGAAAGCATATGGCTTCATATGGATATAATTGAGGACATCGTGGCAAATTGTCGCCAGATTTTCAAAGGATCTGTTAACTATGCTTGGACTACTGTTCCTACATATCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCTTGGATGAAAATGAGTGTCAGAAGTCAGCAAGACCACTGAAGTTCTACAACTCTGAGGTATGCTCCCCCAACCACCTTCTATTCATACAGCATCTTTCTGTTTGCCATCATTTGCAAAGAGGAAGATTGGTCCTAAAGCAAATTAAAAAAGATTTTAAAAAGCATTGA 1050 0.4324 MADESVVESPVKRQRDDEENGVSVSMDTEGGKDPQGNGLSSVIPGWFSEISSMWPGEAHSLKVEKILFQGKSEYQNIMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREIARHSSVEKIDICEIDSMVVDVSKQYFPDVAVGYEDPRVTLTVGDGVAFLKNVPEGMYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVLCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPLDENECQKSARPLKFYNSEVCSPNHLLFIQHLSVCHHLQRGRLVLKQIKKDFKKH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03253 349 FunFam Spermidine synthase 1 97 329 - -
Vimu11g03253 349 FunFam Spermidine synthase 1 37 96 - -
Vimu11g03253 349 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g03253 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 314 IPR029063 -
Vimu11g03253 349 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Vimu11g03253 349 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Vimu11g03253 349 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 320 IPR001045 GO:0003824
Vimu11g03253 349 CDD AdoMet_MTases 122 233 - -
Vimu11g03253 349 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Vimu11g03253 349 Pfam Spermine/spermidine synthase domain 102 289 - -
Vimu11g03253 349 Gene3D Vaccinia Virus protein VP39 97 341 IPR029063 -
Vimu11g03253 349 MobiDBLite consensus disorder prediction 1 38 - -
Vimu11g03253 349 NCBIfam spermidine synthase 46 316 IPR001045 GO:0003824
Vimu11g03253 349 Hamap Polyamine aminopropyltransferase [speE]. 45 333 IPR001045 GO:0003824
Vimu11g03253 349 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03253 Vimu-Chr11 52641091 52644718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03253 K00797 - gmx:100812978 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03253 11 52641091 52644718 Vimu11g03253 11 52641091 52644718 ECH
Vimu7g03734 7 32653089 32655784 Vimu11g03253 11 52641091 52644718 PCT