Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g03083 | ATGTCAGAGAGAATGACTATAGTTTCAGAGTGTTTCTGTGTTATTCTCCTGCTTTATTCATGTGGCTCAGTAGTTTGTGTTAAATACAACACTGGAGCAAGTATTGTGCCAGGCAAATTGAATGTTCATCTTGTTGCTCATTCCCATGATGATGTTGGCTGGCTCAAGACCGTTGATCAATACTATGTTGGGTCCAACCATACAATTCAGGGGGCATGTGTGGAGAATGTGCTGGATTCGGTGGTTATGTCCCTGCAGCGTGACCAAAACAGGAAGTTTGTATTCGCTGAGATGGCATTTTTCCATAGATGGTGGGTGGAACAAACTCCAGAAACACAAGCGCAAGTGACAAAGCTTGTGGATGCTGGCCAGCTAGAATTTGTAAATGGTGGTTGGTGCATGCATGATGAAGCAACTACTCACTACGTAGACATGATTGATCAAACTACTCTGGGTCACCGCTTCATCAAAAACCAATTCAACAAGATCCCTCGTGCAGGGTGGCAGATTGATCCCTTTGGACATTCTGCTGTTCAAGCTTATTTGCTTGGTGCTGAGCTTGGTTTTGATTCAGTGCACTTCGCTAGGATTGATTATCAGGACAGAGAAAAACGCAAAGTTGATAGAACTCTTGAAGCTGTGTGGCGTGGCTCCAAGACATTTGGCTCTTCAGCCCAGATTTTTTCCAACACTTTTCCTGTTCGTTATGGTCCACCGGAAAACTTCCATTTTGAAGTCAATGACGACTTTGTTCCCATACAGGATGATCCCCTTCTATTTGATTACAATGTGGAACAGCGAGTCCGGGACTTCATTGCTGCTGCTATTACACAAGCAAATGTGACTAGGACGAACCATATCATGTGGACAATGGGCGATGATTTCCAGTACCAATATGCAGAGAGTTGGTTCAAGCAAATGGATAAACTAATTCACCATGTTAACAAGGATGGCAGAGTGAATGCTTTATATTCTACCCCATCTATTTACACTGATGCAAAAAATGCTGCAAATCAACAATGGCCACTAAAAATTGATGATTACTTCCCGTATGCAGATGATCCACATGGTTATTGGACAGGCTATTACACCAGTCGCCCAGCCTTTAAGCGATATGTTAGGATCCTAAGTGGATACTATTTGGCAGCACGCCAACTTGAATTTTTTGCGGGAAAGAAATCTGTAAAGCACACTTCAGACCTTGGAGATGCTCTGGCCATTGCACAACATCATGATGCTGTCTCTGGCACTGCCAAACAACACACAACTGATGACTATGCAAAACGACTTGCCATTGGAGCCTCAAGGGCTGAGGATGTTGTTAGTTCCTCTTTGTATTTCCTTACTAGCAAGAAAAGCACAGCACCCACATCGGCATTTTCCCAGTGTCAATTACTCAACATCAGTTACTGTCCACCAACAGAAGACAGTATTCCACAAGCGAATAGTTTGGTATTAGTGGTGTATAACCCACTTGGATGGAATCGTTCAGACATTGTAAGAATTCCAGTTAATGACGCAAATCTTGTTGTCAAAGATTCATTGGGAAATAATGTTCAAACACAATACATAGAAGTGGATAGTGTTACAGCAAATTTAAGAGAAATCTACGTCAAAGTCTATCTTGGGGTGTCACCAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGCTTCAGTACCTCCACTTGGATGGATTGAAAGCAGAAAGGGATTTCTTTCGCACCTCACCACCAGTCCGCGAAATGATACAATTGAAGTAGGACCTGGAAATTTGAAGCTGTCTTTTTCTTCAGGGTCTGGACAACTCATACGCATGCATAATTCCAGAACTGGAGTAGATGTACAAATTCAGCAAAGCTATCTCTGGTATAATTCTAGTGATTCTGGCGCATATACTTTTCGGCCCGATTCCCCTCCAAATATTGTTTCAAAATCAGTGCCCTTCAAGATAATCCGCGGACCATTAGTGGATGAGGTTCATCAGAATTTTAGTTCATGGATTTACCAGATTACCAGGGTTTACAAAGACAAAGAGCATGCTGAGATTGAATACACTATTGGTTCAATTCCTACGGAGGATGAAGTTGGGAAAGAGGTAATCACACAATTGACAACAGGTATGCTGACAAACAAAGAGTTTTACACTGATTCTAATGGAAGAGATTTTTTGAAACGGGTACGAGATTATAGGGAAGATTGGCCCCTTAAAGTTAATGAGCCAGTAGCAGGCAACTATTATCCACTCAATCTTGGAATTTATATTAAGGATAATAAATCTGAATTATCAATCTTAGTTGATCGGGCTACTGGAGGAGGCAGTATAAAAGATGGTCAGGTGGAACTCATGCTTCATAGGCGACTGCTTTCTGATGATGGCAAAGGAGTAAACGAAAATCTTGACGAACAAGTGTGCCAAAATAATAATTGTCAAGGACTAACAGTAAGAGGAAATTATCATGTGGCCATCCACAACCTTAGAGCTGGTTCACAATGGCGCCGTACAACTGGTCAGGAAATTTATTCACCACTGTTATTGGCGTTTTCACATGAGAACATGGGAAATTGGAAGGCCCTCCATGAGACCAAAGGAACTCTCATTGACCCTAATTACAGCTTACCTCCCAATGTAGCTCTGATAACTCTCGAGGTAGTTTTGCAGGAGTTGGATGATGGAATGGTGCTTCTCCGTTTGGCACATCTATATGAGTCTGGTGAAGACGCCCAGCTTTCAACTTTAACCAAAGTTGAATTGAAGAAAATGTTTATCACAAAAACGATAAAGCAGTTGACTGAGGTCAGTTTATCAGCTAACCAAGAGAGGTCAAAAATGAAGAAGAAAACATGGAAGGTTGAAGGGGACAAGGGACAAGAATCAAAAGCAGTTAGGGGTGGTCCTGTCAGCCAAATCACTCTTGTAGTTGAACTTGGTCCAATGGAAATTCGCACTTTCCTACTGAAATTCTAA | 2967 | 0.4193 | MSERMTIVSECFCVILLLYSCGSVVCVKYNTGASIVPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNHTIQGACVENVLDSVVMSLQRDQNRKFVFAEMAFFHRWWVEQTPETQAQVTKLVDAGQLEFVNGGWCMHDEATTHYVDMIDQTTLGHRFIKNQFNKIPRAGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDREKRKVDRTLEAVWRGSKTFGSSAQIFSNTFPVRYGPPENFHFEVNDDFVPIQDDPLLFDYNVEQRVRDFIAAAITQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHHVNKDGRVNALYSTPSIYTDAKNAANQQWPLKIDDYFPYADDPHGYWTGYYTSRPAFKRYVRILSGYYLAARQLEFFAGKKSVKHTSDLGDALAIAQHHDAVSGTAKQHTTDDYAKRLAIGASRAEDVVSSSLYFLTSKKSTAPTSAFSQCQLLNISYCPPTEDSIPQANSLVLVVYNPLGWNRSDIVRIPVNDANLVVKDSLGNNVQTQYIEVDSVTANLREIYVKVYLGVSPKQAPKYWLLFQASVPPLGWIESRKGFLSHLTTSPRNDTIEVGPGNLKLSFSSGSGQLIRMHNSRTGVDVQIQQSYLWYNSSDSGAYTFRPDSPPNIVSKSVPFKIIRGPLVDEVHQNFSSWIYQITRVYKDKEHAEIEYTIGSIPTEDEVGKEVITQLTTGMLTNKEFYTDSNGRDFLKRVRDYREDWPLKVNEPVAGNYYPLNLGIYIKDNKSELSILVDRATGGGSIKDGQVELMLHRRLLSDDGKGVNENLDEQVCQNNNCQGLTVRGNYHVAIHNLRAGSQWRRTTGQEIYSPLLLAFSHENMGNWKALHETKGTLIDPNYSLPPNVALITLEVVLQELDDGMVLLRLAHLYESGEDAQLSTLTKVELKKMFITKTIKQLTEVSLSANQERSKMKKKTWKVEGDKGQESKAVRGGPVSQITLVVELGPMEIRTFLLKF | 988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g03083 | 988 | SMART | Alpha_mann_mid_2 | 357 | 430 | IPR015341 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | Pfam | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 876 | 985 | IPR041147 | - | |
| Vimu7g03083 | 988 | Pfam | Glycosyl hydrolases family 38 N-terminal domain | 41 | 352 | IPR000602 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | SUPERFAMILY | Families 57/38 glycoside transferase middle domain | 356 | 455 | IPR028995 | - | |
| Vimu7g03083 | 988 | Gene3D | - | 866 | 988 | - | - | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 862 | 988 | - | - | |
| Vimu7g03083 | 988 | Gene3D | Glycoside hydrolase 38, N terminal domain | 40 | 320 | IPR027291 | - | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 399 | 454 | - | - | |
| Vimu7g03083 | 988 | SUPERFAMILY | Glycoside hydrolase/deacetylase | 29 | 355 | IPR011330 | GO:0005975 | |
| Vimu7g03083 | 988 | Gene3D | Glycoside hydrolase family 38, central domain | 321 | 398 | IPR037094 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 584 | 841 | - | - | |
| Vimu7g03083 | 988 | Gene3D | Glycoside hydrolase family 38, central domain | 399 | 455 | IPR037094 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | Pfam | Alpha mannosidase middle domain | 358 | 447 | IPR015341 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | - | - | |
| Vimu7g03083 | 988 | Gene3D | - | 585 | 842 | - | - | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 319 | 398 | - | - | |
| Vimu7g03083 | 988 | CDD | GH38N_AMII_LAM_like | 40 | 316 | - | - | |
| Vimu7g03083 | 988 | Gene3D | - | 462 | 567 | IPR013780 | - | |
| Vimu7g03083 | 988 | Pfam | Glycosyl hydrolases family 38 C-terminal domain | 589 | 793 | IPR011682 | GO:0004559|GO:0006013 | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 462 | 571 | - | - | |
| Vimu7g03083 | 988 | PANTHER | ALPHA-MANNOSIDASE | 19 | 988 | - | - | |
| Vimu7g03083 | 988 | FunFam | Alpha-mannosidase | 40 | 320 | - | - | |
| Vimu7g03083 | 988 | SUPERFAMILY | Galactose mutarotase-like | 457 | 988 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g03083 | Vimu-Chr7 | 26163315 | 26171920 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu7g03083 | 10 | 943 | Glycoside Hydrolase | AT3G26720 | 58.799 | 0.0 | 1158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g03083 | K01191 | - | gmx:100806041 | 1725.68 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu7g03083 | 7 | 26163315 | 26171920 | Vimu7g03083 | 7 | 26163315 | 26171920 | ECH | |
| Vimu7g03083 | 7 | 26163315 | 26171920 | Vimu7g03083 | 7 | 26163315 | 26171920 | PCT | |
| Vimu7g03083 | 7 | 26163315 | 26171920 | Vimu11g00762 | 11 | 7989752 | 7998733 | PCT |