Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00762 TTTCGGACTCTGCAAATGGAAACTCTCTCTGCTTTTCTATGGCTTTCCTTCTGTGCCACACTAGTCTCTGCCAAATACATCAGGTACAATACAGCTGCTGCTATTGCTCCAGGAAAATTGAATGTTCACCTGGTTCCACACTCCCATGATGATGTTGGTTGGCTCAAAACCGTTGATCAGTACTACGTCGGATCAAACAACAGTATCCAGGGGGCATGCGTTGAGAATGTGCTGGACTCGGTGGTTGTATCTCTGAAGAAAGACCCAAATAGAAAGTTTGTGTTTGCCGAAATGGCCTTTTTCCATCGGTGGTGGGTGGAACAAAGTCCAGAAACACAAGAAGAAGTGAGAAAGCTTGTGAATGCGGGGCAGCTAGAGATCATAAACGGTGGTTGGTGCATGCACGATGAAGCTGCAACGCACTACATAGACATGATTGATCAAACCACTTTGGGCCATCGATTTATCAAGGATGAGTTTAACAAGACTCCCACCGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTTCTTGGAGCTGAGCTTGGGTTTGATTCTGTACATTTTGCAAGAATTGATTATCAAGACAGAGCTAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGCCTCCAAAACATTTGGTTCTTCTGCTCAGATTTTTGCCAATGCTTTCCCTGTTCATTACAGTGCTCCAAATGGTTTCAACTTTGAAGTCAATAATGCTGATGTTAATGTTGTTCCAGTGCAGGATGATCCTCTTCTTTTTGACTACAACGTTGACCAACGTGTCAAAGACTTTATTGAAGCTGCTACTACCCAAGCAAATGTGACGAGGACAAACCATATAATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAGGATGGTAGAGTAAATGCTTTGTATTCCACTCCATCTATTTACACCAATGCCAAAAATGCTGCTAATCAAACTTGGCCACTGAAAACTGATGATTACTTCCCGTATGCTGATAGTGCTAATGCTTATTGGACTGGCTATTTCACGAGTCGCCCAGCCTTAAAGCGATATGTTAGGATGACAAGTGGATACTATTTGGCAACGCGTCAACTTGAGTTTTTTGCTGGAAAGCAATCAGCTAAATACAATACTTTTGGTCTTGGAGATGCTCTAGGAATTGCACAACACCATGATGCTGTCAGTGGCACTGCCAAACAGCATACAACCAATGACTATGCCAAACGACTGGCCATTGGAGTCTCTGAGGCTGAAGCAGTTGTTAGTTCTTCTTTGGCTTGTCTTACTAGTAAGAAATCAAGTGGTCAATGTTCAGAACCTGCATCGGCTTTTGCCCAGTGTCAATTGTTAAATATCAGTTACTGCCCTCCTACAGAAGATAACATTCCAGACGCTAAGAGTTTGGTAGTTGTGGTGTATAATCCACTTGGATGGAAACGTACTGATATTGTCAAAATACCAGTTAATGATGCTAATCTTGTTGTCCAAGACTCACTGGGCAATAATATTGAAGTACAATATGTGGATGTGGATGATGTTACAACAAATTTAAGAAATTTCTATGTAAAGGCTTATTTGGGGGTGTCACCAAAACAAGCCCCAAAGTACTGGCTTCTGTTTCAGGCGTCAGTACCTCCACTTGGATGGAGCACGTACTTCATTTCTAAAGCAACGGGAACAGGGTCCAAAACAAAAACCCTATCTATCCCCGGCGGTCAGAGAGGTGACACCGTTGTCATTGGGCCCGGAAATTTAAAGATGTCCTTTTCCTCAACCTCTGGGCAACTCAAAAGGATGTATAATTCTAGAACTGGAGTTGATATACCTATTCAGCAAAGTTATCTCTATTATGGATCTAGTGAGGGTGATAGTGATCCTCAGGCTTCTGGTGCGTATATATTCCGGCCTAATGGATCCCCTCCAACTATCATTTCAAGATCAGTGCCCACTAAGGTAATCCGCGGACCACTAGTTGATGAAGTTCATCAGAAATTTAGCTCTTGGATTTATCAGGTTACTAGGCTTTACAAAGGCAAAGACCATGCTGAAGTCGAATTCACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTGATAACACGAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACTGATTCCAACGGCAGAGATTTTCTCAAACGAGTTCGAGATCATAGGGATGATTGGCCCCTTCAAGTAACTCAACCAGTTGCAGGAAACTATTACCCAATCAATCTTGGAATTTATACCAAGGATAAGAAATCTGAGTTCTCAGTCTTAGTTGATCGTGCCACTGGTGGGGCTAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTTCACGATGATGGTCGAGGAGTTGGGGAAGCACTCGACGAACAAGTTTGCGTGAACAATAACAAAACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCAGCATAGACAAACTTGGGGCTGGTGCGCGCTGGCGCCGTACAACTGGTCAAGAAATCTATTCGCCATTCTTATTGGCTTTTACACATGAGAACTTGGAAAGTTGGAAGTCCTCACATTGGACCAAAGGAACGATCCTGGACCCAAATTACAGCTTGCCACCGAATGTAGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAGTTGTGCTTCTCCGTTTGGCACATCTATATGAGCCAAGTGAAGATGCTGAGTATTCAACTCTAACCAAAGTAGAATTGAAGAAGCTGATTGCCAAGAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTATCAGCTAACCAAGAGAAGTCAGAAATAAAGAAAATGACATGGAAGGTTGAAGGAGACAATGGACAAGAAGCTCAAGGTCTTAGGGGTGGCCCTGTCAGCTATCCTAATTTGGTTGTTGAGCTTGGCCCCATGGAAATACGAACTTTCCTATTGAAACTTTCAAATACCCCAAGTCATCATTGA 3057 0.4262 FRTLQMETLSAFLWLSFCATLVSAKYIRYNTAAAIAPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVVSLKKDPNRKFVFAEMAFFHRWWVEQSPETQEEVRKLVNAGQLEIINGGWCMHDEAATHYIDMIDQTTLGHRFIKDEFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKADKSLEVVWRASKTFGSSAQIFANAFPVHYSAPNGFNFEVNNADVNVVPVQDDPLLFDYNVDQRVKDFIEAATTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAANQTWPLKTDDYFPYADSANAYWTGYFTSRPALKRYVRMTSGYYLATRQLEFFAGKQSAKYNTFGLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGVSEAEAVVSSSLACLTSKKSSGQCSEPASAFAQCQLLNISYCPPTEDNIPDAKSLVVVVYNPLGWKRTDIVKIPVNDANLVVQDSLGNNIEVQYVDVDDVTTNLRNFYVKAYLGVSPKQAPKYWLLFQASVPPLGWSTYFISKATGTGSKTKTLSIPGGQRGDTVVIGPGNLKMSFSSTSGQLKRMYNSRTGVDIPIQQSYLYYGSSEGDSDPQASGAYIFRPNGSPPTIISRSVPTKVIRGPLVDEVHQKFSSWIYQVTRLYKGKDHAEVEFTIGPIPTDDGVGKEVITRMTANMATNKEFYTDSNGRDFLKRVRDHRDDWPLQVTQPVAGNYYPINLGIYTKDKKSEFSVLVDRATGGASIKDGEVELMLHRRILHDDGRGVGEALDEQVCVNNNKTCEGLTVRGNYYISIDKLGAGARWRRTTGQEIYSPFLLAFTHENLESWKSSHWTKGTILDPNYSLPPNVALITLEELDGGVVLLRLAHLYEPSEDAEYSTLTKVELKKLIAKKTIKELKEVSLSANQEKSEIKKMTWKVEGDNGQEAQGLRGGPVSYPNLVVELGPMEIRTFLLKLSNTPSHH 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00762 1018 CDD GH38N_AMII_LAM_like 40 319 - -
Vimu11g00762 1018 Gene3D Glycoside hydrolase family 38, central domain 324 403 IPR037094 GO:0004559|GO:0006013
Vimu11g00762 1018 FunFam Alpha-mannosidase 889 1013 - -
Vimu11g00762 1018 Gene3D Glycoside hydrolase family 38, central domain 404 458 IPR037094 GO:0004559|GO:0006013
Vimu11g00762 1018 Gene3D - 481 594 IPR013780 -
Vimu11g00762 1018 Pfam Alpha mannosidase middle domain 360 452 IPR015341 GO:0004559|GO:0006013
Vimu11g00762 1018 SUPERFAMILY Families 57/38 glycoside transferase middle domain 360 459 IPR028995 -
Vimu11g00762 1018 Gene3D Glycoside hydrolase 38, N terminal domain 40 323 IPR027291 -
Vimu11g00762 1018 Gene3D - 601 869 - -
Vimu11g00762 1018 Gene3D - 892 1014 - -
Vimu11g00762 1018 Pfam Glycosyl hydrolases family 38 C-terminal domain 605 819 IPR011682 GO:0004559|GO:0006013
Vimu11g00762 1018 PANTHER ALPHA-MANNOSIDASE 15 1013 - -
Vimu11g00762 1018 FunFam Alpha-mannosidase 470 581 - -
Vimu11g00762 1018 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 903 1008 IPR041147 -
Vimu11g00762 1018 SUPERFAMILY Glycoside hydrolase/deacetylase 29 356 IPR011330 GO:0005975
Vimu11g00762 1018 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 355 IPR000602 GO:0004559|GO:0006013
Vimu11g00762 1018 SMART Alpha_mann_mid_2 360 434 IPR015341 GO:0004559|GO:0006013
Vimu11g00762 1018 FunFam Alpha-mannosidase 603 869 - -
Vimu11g00762 1018 FunFam Alpha-mannosidase 403 458 - -
Vimu11g00762 1018 SUPERFAMILY Galactose mutarotase-like 467 1011 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu11g00762 1018 FunFam Alpha-mannosidase 322 402 - -
Vimu11g00762 1018 FunFam Alpha-mannosidase 40 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00762 Vimu-Chr11 7989752 7998733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00762 13 958 Glycoside Hydrolase AT3G26720 60.737 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00762 K01191 - gmx:100775419 1845.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00762 11 7989752 7998733 Vimu11g00762 11 7989752 7998733 ECH
Vimu7g03083 7 26163315 26171920 Vimu11g00762 11 7989752 7998733 PCT