Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03057 ATGGGAGACATAGTCAAGAAAATATTGGCCAAACCCATCCAGCTCGCCGACCAAGTCACCAAAGCCGCCGACGAGGCCACTTCCTTCAAACAGGAATGCGCCGAGCTCAAGTCCAAGACGGAGAAGCTGGCGGCGCTGCTCCGTCAGGCGGCGCGTGCCAGTTCCGAACTCTACGAGCGTCCCACGCGCCGCATCATCGAAGAGACCGAACAGGTCCTCGACAAGGCTCTTGGCCTGGTCCTCAAGTGTCGCGGCAACGCTCTCATGAAGCGCGTGTTTACACTCAACCCTAGCGCCGCCTTCCGCAAGGTCTCCTCCCACCTTGAAAACTCCGTCGGCGACATCTCCTGGCTCCTCCGCGTCTCGGCCGGCGAAGCCGGCGGCGAGTACCTCGGGGGGCTCCCTCCCATAGCCGCGAACGAGCCGATCCTCTGCTTCATCTGGGAGCAGATCGCCGTCCTCCACACGGGGTCCCCGGAGGAGCGGTCGGACGCCGCGGCGTCGCTGGTGTCTCTGGCGAGTGACAATCCGCGCTATGGTAAGCTGATAATTGAGGAGGGCGGGGTGGGCCCTCTGCTGAAGCTTCTGAAGGAAGGGAAAAGCGAAGGGCAAGAGAACGCTGCACGTGCCGTGGGTCTGTTGGGGCGTGATCCTGAGAGCGTGGAGCATATGATCCACGTTGGGGCGTGCTCGGTGCTGGCAAAGATCCTGAAGGAAGGTCCTATGAAAGTGCAAGGTGTGGTGGCGTGGGCCGTGTCGGAGCTCGCTGCGAATTACCCCAAGTCTCAGGACCTTTTCGCTCAGCACAAGATGGTGACCTTGCTCGTTGGCCACCTCGCCTTCGAAACCGTGGAGGAACACAGTAAGTACGCTATTGTCAGCAAGAAACCCACTTCCATCCACGCCCTCGTCGTCGCCAGTAGCAACACCAACAACACTAATCTCCGAAATAAAAATCACCACCACGACGCCGAAATTCCCACACGCATCCCGCATCCCTTCGGTGAAGGACCACGAAATCTCCACAGAGTAATCACCAGCACAATCGCAATGCACGCTGCCAACAAGCAAGGAAACGAGACCAGTCAGAATCAGAGCAAGAGTAATGGAGTTGGTAATGACGGTAAACTGGGGAACAACAATCAGAATCACCAGCGAAACTATTCACATTCGGGGATTAACATGAAAGGGAGGGATCTGGAGGATCCTGGGACCAAAGCTTACATGAAGGAAATGGCAGCGAGGGCTCTCTGGCAACTTGCCAAAGGTAATTCCCCAATTTGTCGTAGCATCACCGAATCACGAGCCTTGCTGTGTTTCGCTGTTCTCCTTGAGAAAGGAACAGAGGCTGTGCAGTACAATTCGGCGATGGCGGTGATGGAGATTACGGCTGTGGCAGAGAAAGATCCGGAATTGAGGAAATCGGCGTTCAAACCGAACTCTCCCGCTTGCAAAGCCGTGGTTGATCAGGTTGTCAAGATAATCGAGAAAGCGGATTCGGATTCAATCCTTCTGATTCCGTGCATCAAGACGATTGGGAATTTGGCGAGAACGTTCAAGGCTACTGAGACAAGGATGATCGGGCCGTTGGTGAGGCTTCTGGACGAAAGGGAAGCGGAGGTGACAAGAGAGGCGTCGATTGCACTGGCGAAATTCGCCTGCACCGAGAATTACCTGCACGTGGATCACGCCAAGGCCATTATAAGCTCCGGCGGGGCTAAACACTTGATTCAGCTGGTCTATTTTGGGGAAGAGATGGTGCAGATTCCGGCGCTGCTTCTTCTCTCCTACATTGCAATGCACGTCCCCGACAGCGACGAACTTGCTCAGGCTGAAGTCCTCGGAGTCATCGAATGGGCCTCCAAGCAATCCTCCGTCGCCCATAACCAAACACTGGAGGCCCTTTTGCTCGATTCTAAGAGCAAGTTGGAGCTTTACCAGTCCAGAGGCCCCAGAGGATCCCATCAACCACACTTGCATCACTAG 1986 0.5579 MGDIVKKILAKPIQLADQVTKAADEATSFKQECAELKSKTEKLAALLRQAARASSELYERPTRRIIEETEQVLDKALGLVLKCRGNALMKRVFTLNPSAAFRKVSSHLENSVGDISWLLRVSAGEAGGEYLGGLPPIAANEPILCFIWEQIAVLHTGSPEERSDAAASLVSLASDNPRYGKLIIEEGGVGPLLKLLKEGKSEGQENAARAVGLLGRDPESVEHMIHVGACSVLAKILKEGPMKVQGVVAWAVSELAANYPKSQDLFAQHKMVTLLVGHLAFETVEEHSKYAIVSKKPTSIHALVVASSNTNNTNLRNKNHHHDAEIPTRIPHPFGEGPRNLHRVITSTIAMHAANKQGNETSQNQSKSNGVGNDGKLGNNNQNHQRNYSHSGINMKGRDLEDPGTKAYMKEMAARALWQLAKGNSPICRSITESRALLCFAVLLEKGTEAVQYNSAMAVMEITAVAEKDPELRKSAFKPNSPACKAVVDQVVKIIEKADSDSILLIPCIKTIGNLARTFKATETRMIGPLVRLLDEREAEVTREASIALAKFACTENYLHVDHAKAIISSGGAKHLIQLVYFGEEMVQIPALLLLSYIAMHVPDSDELAQAEVLGVIEWASKQSSVAHNQTLEALLLDSKSKLELYQSRGPRGSHQPHLHH 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03057 661 FunFam Armadillo repeat only 2 149 318 - -
Vimu7g03057 661 Pfam Armadillo/beta-catenin-like repeat 182 212 IPR000225 GO:0005515
Vimu7g03057 661 Coils Coil 19 56 - -
Vimu7g03057 661 Gene3D - 3 121 IPR036537 GO:0007166
Vimu7g03057 661 PANTHER ARMADILLO REPEAT ONLY 4 1 650 - -
Vimu7g03057 661 Gene3D - 398 638 IPR011989 -
Vimu7g03057 661 MobiDBLite consensus disorder prediction 356 392 - -
Vimu7g03057 661 Gene3D - 149 326 IPR011989 -
Vimu7g03057 661 SMART arm_5 217 257 IPR000225 GO:0005515
Vimu7g03057 661 SMART arm_5 480 517 IPR000225 GO:0005515
Vimu7g03057 661 SMART arm_5 175 216 IPR000225 GO:0005515
Vimu7g03057 661 SMART arm_5 424 464 IPR000225 GO:0005515
Vimu7g03057 661 SMART arm_5 560 600 IPR000225 GO:0005515
Vimu7g03057 661 SUPERFAMILY ARM repeat 152 618 IPR016024 -
Vimu7g03057 661 MobiDBLite consensus disorder prediction 356 398 - -
Vimu7g03057 661 FunFam Armadillo repeat only 4 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03057 Vimu-Chr7 25809454 25812633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03057 - - gmx:100801498 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03057 7 25809454 25812633 Vimu7g03057 7 25809454 25812633 ECH
Vimu7g03057 7 25809454 25812633 Vimu11g00747 11 7905422 7909927 PCT
Vimu7g03057 7 25809454 25812633 Vimu7g03057 7 25809454 25812633 PCT