Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03010 ATGGCCGGCGCATCCGAAGAGGGACAAGTCATCGGCTGCCACACCATTGAGGCATGGACGGAACAACTCCAAAAGGGCAATGATTCCAAGAAACTCATTGTGGTGGATTTTACTGCTTCTTGGTGTGGACCATGCCGTTTCATTTCTCCATTCCTGGCTGAGCTGGCTAAGAAGTACGCAAATGTCATATTTCTGAAGGTGGATGTAGACGAATTAAAGAGTGTTGCTCAAGATTTTGCTGTTGAGGCAATGCCGACTTTTGTGTTTGTGAAAGAGGGAAGTCTTCTGGGGAAAGTGGTGGGAGCAAAGAAGGAAGAATTGCAGCAGACAATAGAGAAACATGTGTCTGCAGCTAGTGCTTAA 363 0.4656 MAGASEEGQVIGCHTIEAWTEQLQKGNDSKKLIVVDFTASWCGPCRFISPFLAELAKKYANVIFLKVDVDELKSVAQDFAVEAMPTFVFVKEGSLLGKVVGAKKEELQQTIEKHVSAASA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03010 120 SUPERFAMILY Thioredoxin-like 8 116 IPR036249 -
Vimu7g03010 120 PRINTS Thioredoxin family signature 41 50 - -
Vimu7g03010 120 PRINTS Thioredoxin family signature 80 91 - -
Vimu7g03010 120 PRINTS Thioredoxin family signature 33 41 - -
Vimu7g03010 120 Gene3D Glutaredoxin 2 119 - -
Vimu7g03010 120 FunFam Thioredoxin 9 116 - -
Vimu7g03010 120 PANTHER THIOREDOXIN 10 113 - -
Vimu7g03010 120 ProSitePatterns Thioredoxin family active site. 34 52 IPR017937 -
Vimu7g03010 120 CDD TRX_family 21 112 - -
Vimu7g03010 120 ProSiteProfiles Thioredoxin domain profile. 1 116 IPR013766 -
Vimu7g03010 120 Pfam Thioredoxin 14 113 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03010 Vimu-Chr7 25367871 25370345 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03010 K03671 - gmx:100499701 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03010 7 25367871 25370345 Vimu7g03010 7 25367871 25370345 ECH
Vimu7g03010 7 25367871 25370345 Vimu6g01478 6 14083303 14086255 PCT