Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01478 ATGGCTGCGAACGATGGATTCGACACGCTTCAATACTTGTCGCTCCTCTCCAAGGTCTGCGTCGAGTTGGAGTCCCACACCGGCGCCGCCGACAAGGTCCTCGCCGAGTTCATCATCCATTTGGCTCGTTCATCCGACAACCTTCACCACTTCAACGCCGTACTCAATGACAACGGTGCCCATTTTCCTGATTACCTTGTCCGAACGCTTTTCACCCTTGTTCGCGCAGTTCTTGAACCCGCTAAGACAGAGTCCAAAGCCAAACAAGAGGACAGTGGCAGTTCTTCGTTGAAACCTCTCAAGAGAGTCTCCTCTCCGGAAAAAGGGGAAGCAAAACAGTTCACTGCCGCCGGAAACTTGAGTTCTCCATATAAGGACGAGGAGGGAGATGGGTTGCCACGCCAAGAAGTAGATGATGATGATGAAGATTTCGAGATTGAGTTGAACGATGATGCACCTGCATTCTTGCAGGGGCAAACCAAACACTCAATGGACATGTCTCCTCTCAAGATTTTCAAGAATCCAGAAGGTTCTCTGCTCCGCAGCGCGGCGCTTCAGTCTGCACTTGCTAAGGAACGAAGGGAAGTGCGAGAACAGCAGCATAGTTCACTATTTGATTCAATTCCAAAAGATATCAATCGAGCTTGGGAAGACCCTATGCCAGAGAAAGGTGAAAGACACCTTGCTCACGAGCTTAGGGGTGTTGGTTTATCTGCATTTGACATGCCGGAGTGGAAGAGGAACAGCGGAAAATCCATTTCCTTTGGGCCAAAATCAAAGTTTTCTATTCCAGAACAGAGGCAGAGTTTGCCAATTTATAGATTGAAAAATGAATTGGTTCAGGCTGTGCATGATAATCAGGTGTTGGTGGTGATCGGAGAAACTGGTTCTGGGAAGACTACTCAGATTACCCAGTATCTTGCTGAAGCGGGGTACACCACACAGGGGAAAATTGGGTGTACTCAACCACGTAGGGCGGCTGCAGTGTCTGTTGCAAAGCGGGTTGCAGAAGAGTTCGGTTGTCGATTGGGGGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGACCGGATACTCTCATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATGTTAATGGATGAGACTCTGTCACGGTATTCTGTTATCATGCTTGATGAGGCCCATGAAAGAACTGTTTATACTGATGTTCTTTTTGGACTCCTGAAGCTGCTCCTGAAGCGTAGGCCTGAGTTAAGATTGATCGTGACGTCTGCTACTCTGGATGCCGAGAAGTTTTCAGGGTATTTCTTTAACTGTAACATCTTTACAATACCTGGTAGAACTTTTCATGTGGACATACTTTATGCTAAACAGCCTGAGAGTGATTACTTAGATGCATCTTTACGCACTGTTCTGCAGATCCACTTGGATGAACCTGAAGGAGACATTCTTCTCTTCTTAACTGGTCAAGAAGAGATTGATTTTGCTTGCCAAACTCTTGTTGAGAAAATGAAGGAATTAGGTAAGAATGTTCCAGAGCTCGTCATTTTACCGGTTTATAGTGCTCTTCCTAGTGAAATGCAGCACAGGATATTTGAACCTGCTCCACCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACTATTGATGGGATATGTTATGTAATTGATCCTGGGTTTGCTAAGCAGAATGTTTATAACCCTAAGCAAGGTCTTGACTCTTTGGTAATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCAGGACGTGCAGGGCGTACGGGACCTGGGAAGTGTTATCGTCTCTACACTGAAAGTGCATACAGGAATGAGATGTCTCCCACTACAGTTCCGGAGATTCAAAGGATAAATCTTGCAACAACTACTCTTAATATGAAATCTATGGGGATAAACGATCTATTGTCCTTTGATTTTATGGATTCGCCTTCACCTCAGGCGCTTGTTTCTGCTATGGAGCAGCTTTACAGTCTTGGAGCATTGGATGAAGAGGGCTTGTTAACCAAACTGGGGAGGAAAATGGCAGAATTTCCTTTGGATCCACCGTTGTCCAAGATGCTACTTGCCAGTGTGGATCTTGGATGCAGTGATGAGATTTTGACCATAATTGCCATGATTCAAACCGGAAATATTTTTTACAGGCCAAGGGAAAAGCAAGGCCGAGCAGATCAGAAGAGGGCAAAGTTTTTCCTGCCAGAGGGTGACCATCTTACTCTACTTGCTGTTTATGAGGCTTGGAAAGCTAAGAACTTTTCAGGGCCGTGGTGTTCTGAGAACTTTGTTCAATCTCGATCGTTGAGAAGAGTCCAGGATGTCAGGAAACAGCTTCTCACTATCATGGATAGGTACAAATTAGATGTTGCGAGTGCTGGAATTAACTTCACCAAAGTGACGAAGGCTATCACAGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCTCAGGAAGGTTACAGAACCCTGGTTGAGAACCAGTCTGTATATATCCATCCAAGCTCAGCTTTGTTCCACAGACAGCCAGACTGGATAATCTACCACGAGCTTGTGATGACAACGAAGGAATATATGCGTGAGGTCACTGCCATAGACCCTAAATGGTTAGTTGAATTGGCTCCAAGATTTTTCAAAGCTGTAGATCCCACAAAGATGAGCAAGCGAAAGCGTCAAGAACGTATACAACCACTTCATGGTGCATCGGAACAATGGCGTTTGAGTAAACGCCGTGCATGA 2763 0.4553 MAANDGFDTLQYLSLLSKVCVELESHTGAADKVLAEFIIHLARSSDNLHHFNAVLNDNGAHFPDYLVRTLFTLVRAVLEPAKTESKAKQEDSGSSSLKPLKRVSSPEKGEAKQFTAAGNLSSPYKDEEGDGLPRQEVDDDDEDFEIELNDDAPAFLQGQTKHSMDMSPLKIFKNPEGSLLRSAALQSALAKERREVREQQHSSLFDSIPKDINRAWEDPMPEKGERHLAHELRGVGLSAFDMPEWKRNSGKSISFGPKSKFSIPEQRQSLPIYRLKNELVQAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTQGKIGCTQPRRAAAVSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTLIKYMTDGMLLREMLMDETLSRYSVIMLDEAHERTVYTDVLFGLLKLLLKRRPELRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFHVDILYAKQPESDYLDASLRTVLQIHLDEPEGDILLFLTGQEEIDFACQTLVEKMKELGKNVPELVILPVYSALPSEMQHRIFEPAPPGKRKVVVATNIAEASLTIDGICYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTVPEIQRINLATTTLNMKSMGINDLLSFDFMDSPSPQALVSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQGRADQKRAKFFLPEGDHLTLLAVYEAWKAKNFSGPWCSENFVQSRSLRRVQDVRKQLLTIMDRYKLDVASAGINFTKVTKAITAGFFFHAARKDPQEGYRTLVENQSVYIHPSSALFHRQPDWIIYHELVMTTKEYMREVTAIDPKWLVELAPRFFKAVDPTKMSKRKRQERIQPLHGASEQWRLSKRRA 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01478 920 Pfam Helicase associated domain (HA2) 662 750 IPR007502 GO:0004386
Vimu6g01478 920 PANTHER ATP-DEPENDENT RNA HELICASE 210 886 - -
Vimu6g01478 920 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 237 445 - -
Vimu6g01478 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 443 IPR014001 -
Vimu6g01478 920 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 645 744 - -
Vimu6g01478 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 793 IPR027417 -
Vimu6g01478 920 SMART ultradead3 257 452 IPR014001 -
Vimu6g01478 920 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 385 394 IPR002464 -
Vimu6g01478 920 MobiDBLite consensus disorder prediction 892 920 - -
Vimu6g01478 920 Pfam DEAD/DEAH box helicase 278 426 IPR011545 GO:0003676|GO:0005524
Vimu6g01478 920 Gene3D - 645 742 - -
Vimu6g01478 920 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 446 620 - -
Vimu6g01478 920 CDD GH2-like_DHX8 10 76 - -
Vimu6g01478 920 Gene3D - 446 620 IPR027417 -
Vimu6g01478 920 CDD SF2_C_RHA 447 608 - -
Vimu6g01478 920 SMART ha2_5 661 751 IPR007502 GO:0004386
Vimu6g01478 920 MobiDBLite consensus disorder prediction 82 137 - -
Vimu6g01478 920 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 809 883 IPR011709 -
Vimu6g01478 920 Pfam Helicase conserved C-terminal domain 469 600 IPR001650 -
Vimu6g01478 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 641 IPR001650 -
Vimu6g01478 920 Gene3D - 244 445 IPR027417 -
Vimu6g01478 920 SMART helicmild6 496 600 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01478 Vimu-Chr6 14083303 14086255 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01478 K12818 - gmx:100815173 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03010 7 25367871 25370345 Vimu6g01478 6 14083303 14086255 PCT