Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03000 ATGTCTGGTTCTTTCAAGCAGAAACTGAGGAATTCCTTGACGAAAAAGGGTAGGCGAAGCAGCAAGGTCATGTCCATTGAAATTGAGGATGTCCACGATGCTGAGGAGTTGAAAATAGTTGACGAGTTCCGTCAAGCTCTTATTTTGGACGAACTACTCCCTGCAAAACACGATGATTACCATATGATGCTTAGATTCCTCAAGGCCAGAAAGTTTGATGTTGAGAAAACAAAGGAAATGTGGTCTGAAATGCTCAAATGGAGGAAGGAGTTTGGTGCTGACACTATTCAGGAGGACTTTGATTTCAAAGAAATTGATGAAGTTTTGCAATATTATCCCCAAGGACACCATGGAGTGGACAAAGAGGGAAGGCCTGTATATATCGAGAGACTAGGCCAAGTCGATGCCGGGAAAATGATGCAAGTCACAACCATGGATCGCTATATCAAATACCATGTAAAGGAGTTCGAGAGGACATTTGATGTGAAGTTTGCAGCTTGTTCGATTGCTGCAAAGAAGCACATCGATCAAAGTACAACTATCCTCGATGTGCAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTTGTTACTCGTCTTCAGAAGATTGACGGTGATAACTATCCTGAGACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATACTGTGGAACACCGTAAAATCATTCCTTGACCCTAAGACCACCGCAAAAATCAACGTTCTTGGCAACAAGTTCGACACCAAATTGCTAGAAATAATTGATGCAAGTGAGTTGCCTGAATTTTTGGGAGGTACTTGTAATTGTGAAGGAGGCTGTATGCGCTCTGATAAGGGCCCATGGAAGGATCCAGAAATATTGAAGATGGTTCACAGCGGTGCTCACAAATGCTCAAGAAAGGGTGACTCACACGACGAAGAGAAATCAATCGCTGAGGAACCCGAGACTCCCAAGTTCGAGGCGGCCCCTCAGGTTGCTCCCGTTGCTGAAGTGGTCACTGCTACTATGGAAGTCTCCAAGCCTGTGGAGTTAACCCCAGCGGCTGTCGAGAAACCTTGCCAACCTAATGACGCAGTTGATCCAACTTCGGCAGCAGCGGCTGCAGCGGCGGCGGCGGCGGCAGCGGCAGCATCAACAGTGTCTATCAAAGGCTCTTCTGCTCAATCGCTTTTGACCAATTTGCCTGCAACGTGCTTGTCTCCTGCAGAGTTTGCGACTGTGATGAAACGCATGGCTGAGTTGGAGGAGAAAATGGTGACCATGAATAAGCAGCCTGCAGCCATGCCACCCGAGAAGGAGAAAATGCTTAATGCAACTATGACTCGGGCCGATGACTTGGAGCAGCAACTTTTGGCCACCAAGAAGGCTCTGGAGGATTCACTTGTTAAGCAAGAAGAGCTTTCTGCTTACATTGAGAAAAAGAAGAAGAAGAAGAAGAGATTCGTATGTGTCTGA 1476 0.4641 MSGSFKQKLRNSLTKKGRRSSKVMSIEIEDVHDAEELKIVDEFRQALILDELLPAKHDDYHMMLRFLKARKFDVEKTKEMWSEMLKWRKEFGADTIQEDFDFKEIDEVLQYYPQGHHGVDKEGRPVYIERLGQVDAGKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELVTRLQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKINVLGNKFDTKLLEIIDASELPEFLGGTCNCEGGCMRSDKGPWKDPEILKMVHSGAHKCSRKGDSHDEEKSIAEEPETPKFEAAPQVAPVAEVVTATMEVSKPVELTPAAVEKPCQPNDAVDPTSAAAAAAAAAAAAAASTVSIKGSSAQSLLTNLPATCLSPAEFATVMKRMAELEEKMVTMNKQPAAMPPEKEKMLNATMTRADDLEQQLLATKKALEDSLVKQEELSAYIEKKKKKKKRFVCV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03000 491 Pfam CRAL/TRIO domain 110 272 IPR001251 -
Vimu7g03000 491 PRINTS Cellular retinaldehyde-binding protein signature 264 273 - -
Vimu7g03000 491 PRINTS Cellular retinaldehyde-binding protein signature 62 84 - -
Vimu7g03000 491 PRINTS Cellular retinaldehyde-binding protein signature 231 250 - -
Vimu7g03000 491 Pfam CRAL/TRIO, N-terminal domain 5 82 IPR011074 -
Vimu7g03000 491 SUPERFAMILY CRAL/TRIO domain 104 297 IPR036865 -
Vimu7g03000 491 Coils Coil 411 431 - -
Vimu7g03000 491 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Vimu7g03000 491 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 482 - -
Vimu7g03000 491 SMART sec14_4 104 275 IPR001251 -
Vimu7g03000 491 Gene3D - 12 91 - -
Vimu7g03000 491 SUPERFAMILY CRAL/TRIO N-terminal domain 32 100 IPR036273 -
Vimu7g03000 491 CDD SEC14 105 273 IPR001251 -
Vimu7g03000 491 MobiDBLite consensus disorder prediction 301 322 - -
Vimu7g03000 491 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 278 IPR001251 -
Vimu7g03000 491 FunFam SEC14 cytosolic factor 92 302 - -
Vimu7g03000 491 Gene3D - 92 301 IPR036865 -
Vimu7g03000 491 MobiDBLite consensus disorder prediction 301 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03000 Vimu-Chr7 25272497 25276462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03000 40 269 Acyl Lipid Metabolism Gene Families AT5G47730 28.870 1.33e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03000 K26544 - gmx:100527533 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03000 7 25272497 25276462 Vimu7g03000 7 25272497 25276462 ECH
Vimu5g02366 5 34424388 34427572 Vimu7g03000 7 25272497 25276462 ECH