Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02366 ATGTCTAGTTTGCGAATTTCTTGTCTTCCTTTTGAAACTTCTGTGAGTAATTTGCGTTATGCAAAACCAGGTGCTGAGATGGAATACTCAGAGGATGATAAGAAAAAAAAGCTTGGCTCTTTCAAGAAGGTAGCAATCAGTGCATCTTCAAAGTTCAAGCATTCCTTGCAAAAGAAGGGGAGAAGGCATAGCAGGGTTATGTCTATTGCTATTGAGGATGAAGTTGATGCAGAAGAGTTGCAATCAGTTGATGCTTTTCGCCAAACACTCATCTTAGAAGAGCTATTACCCTCAAAGCATGATGATCATCATATGATGTTAAGATTCTTGAGAGCAAGAAAATATGAAATCGAGAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACAATTCTGGAGGATTTTGAATTCAAGGAGTTAGAAGAAGTCCTAAAGTACTACCCACAAGGGCATCATGGAGTTGATAAGCAAGGGCAACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGTTGCAAGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAGTTTGAGAGGACATTCGCTGTTAAGTTCCCTGCTTGTTCCATTGCAGCCAAGAAACACATTGACCAAAGCACAACAATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAGCGTCTTCAGAAGATTGATGGTGACAACTACCCTGAGACCTTAAACCGTATGTTCATCATTAATGCTGGTTCAGGATTTAGGCTGTTGTGGAACACTGTCAAGTCATTCCTTGATCCTAAGACCACCGCCAAAATCCATGTCCTAGGTAACAAATATCAGAGCAAGTTACTTGAAATCATTGATGCCAGTGAACTTCCAGAGTTCTTGGGTGGTACTTGTACCTGTGAAGACAAAGGTGGTTGCTTGCTTTCAGACAAGGGACCATGGAATGACCCAGAAGTCTTCAAGATGGTTCAAAATGGAGCAGGAAAATGCAAGAGGAAAGCTTTATCTGGGATCGAAGTGAAAACCATAATTGAAGATGATACAGAATGCCAAAAGGAATGCGATTCTTTTAAAGAATCTGCAGCCGTGGAGGATCCCTGTGCTGCTCCAGAAGTGGCATTTGCCCCAGTGAATTCATCTTGGGAGAAAGCAGAACGAAAAGATCAGTTAGCCCTTTCTAAAGATTGTTTGTCTAGCAACAGTAATCCTAATAAGTTTAGAGTCCCATTTACTGGTGGAATCATGTCCGTTCTTATGGCAGTGATAACAGTTATCCGCCTGGCAAAGAAAGTACCAAGAAAAATCACTGGAACTGACATGTTTGGTAACACAGCACATTGTAATGGCAACAAAATGAAAGCACCTGCAATTTGCATGGATGATCAAATGTCCATGATGAAGCGCATGGTTGAACTAGAAGAGAAGGTGAATATCCTTTCTAAGAAACCTGACATATCAGCTGAGATGGAAGAATTGCTGAATAAGGCTCTTAGCAGAATCAGTACGCTGGAACAAGAATTGGTAATTACCAAAAAGTCACTTGACGATGCCCTTATCCGACAAGTGGAGCTTCAAGGTCAAATTGATAAAAAGAAAAAGAAGAGGACGGTGAGTCATACGGACCTTGATTTTGATATAGTATCACGTTGCGTTCTTCCGCTGGTAAGGTGTTGGGTGTCGATTGCTGTCTGA 1749 0.4162 MSSLRISCLPFETSVSNLRYAKPGAEMEYSEDDKKKKLGSFKKVAISASSKFKHSLQKKGRRHSRVMSIAIEDEVDAEELQSVDAFRQTLILEELLPSKHDDHHMMLRFLRARKYEIEKTKQMWADMLQWRREFGADTILEDFEFKELEEVLKYYPQGHHGVDKQGQPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFAVKFPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCEDKGGCLLSDKGPWNDPEVFKMVQNGAGKCKRKALSGIEVKTIIEDDTECQKECDSFKESAAVEDPCAAPEVAFAPVNSSWEKAERKDQLALSKDCLSSNSNPNKFRVPFTGGIMSVLMAVITVIRLAKKVPRKITGTDMFGNTAHCNGNKMKAPAICMDDQMSMMKRMVELEEKVNILSKKPDISAEMEELLNKALSRISTLEQELVITKKSLDDALIRQVELQGQIDKKKKKRTVSHTDLDFDIVSRCVLPLVRCWVSIAV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02366 582 Gene3D - 135 346 IPR036865 -
Vimu5g02366 582 CDD SEC14 148 316 IPR001251 -
Vimu5g02366 582 SMART CRAL_TRIO_N_2 102 127 IPR011074 -
Vimu5g02366 582 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 26 551 - -
Vimu5g02366 582 Pfam CRAL/TRIO, N-terminal domain 99 126 IPR011074 -
Vimu5g02366 582 SMART sec14_4 147 318 IPR001251 -
Vimu5g02366 582 PRINTS Cellular retinaldehyde-binding protein signature 307 316 - -
Vimu5g02366 582 PRINTS Cellular retinaldehyde-binding protein signature 274 293 - -
Vimu5g02366 582 PRINTS Cellular retinaldehyde-binding protein signature 105 127 - -
Vimu5g02366 582 Coils Coil 505 525 - -
Vimu5g02366 582 Gene3D - 64 134 - -
Vimu5g02366 582 FunFam SEC14 cytosolic factor 135 347 - -
Vimu5g02366 582 SUPERFAMILY CRAL/TRIO N-terminal domain 73 143 IPR036273 -
Vimu5g02366 582 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 147 321 IPR001251 -
Vimu5g02366 582 Pfam CRAL/TRIO domain 153 315 IPR001251 -
Vimu5g02366 582 SUPERFAMILY CRAL/TRIO domain 147 343 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02366 Vimu-Chr5 34424388 34427572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02366 81 312 Acyl Lipid Metabolism Gene Families AT5G47730 27.386 1.98e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02366 K26544 - gmx:100792335 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02366 5 34424388 34427572 Vimu5g02366 5 34424388 34427572 ECH
Vimu5g02366 5 34424388 34427572 Vimu7g03000 7 25272497 25276462 ECH