Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02960 ATGGCATCATCTTGGACTCCAAGGCAAAACAAACTATTTGAAGAAGCTCTTGCTATATACGACAGGGACACCCCTGACAAGTGGCAGAATGTGGCAAGAGTAGTTGGAAAATCCGTTGAAGAAGTTAAAACACACTTTGAGATCCTCAAAGAAGATGTCAACCGCATTGAACGTGGACAAAAAGAAATTGATGGGAGTGCAGAAGCAATTAGCCCCGGGTCATTATTAAACAAAGAGCACTTGGCTAAAAGCCCACCGCCACGCATCCAGAATCTGTTTTCGCGATCGGGTGATAAACGGCATTCGTTTAAGCGTTTTAATTGCTCAACACGCAAAGCCCTCGCGCTAAGCCAAGCTTCTTCATGTTCTATTCGGAAGGTGCATGCTAAGCTATGGCCGCTGCAAGTAACATCCGCTGCGGTGGTGTCCATGTCCACGTTCTCCGATCGTGCCTACGCCGACTCTTCCTTCCGATTCCCTTTCTTCTCTTCTTCACCTTCCAATGCGCCGTCGCCGCCGAACCAATCTTCCGACACCAACTCGGAGCCTCCAGCGCCTGAGGAACCTAACAAGTCGGGGTTCGACCCGGAATCGTTAGAAAGAGGAGCCAAAGCTCTCCGTGAAATCAACAGTTCTTCCTACTCAAAGCAGGTGTTTGATTTAATGCGAAAGCAGGAGCAAACTCGCCTCGCTGAATTGGACGCTGAGAGAGTTCACTACGAACTTATTCAATCTCAGGGAGATATTATCAAACCACACTATGAAATACTTGGTGCAGTCTTCCAAAACGCTTGGCATACATGCGACATGCTACTAAAACCTGGCGGACTGGAAAGACAGCGGAAAATGGCTGAAGAACAACGTAATTTAATACAAGAGCAAGCCCAGAGACAGGCCCAGGTGCTGCGATACGAGGATGAATTAGCAAGGAAAAGAATGCAGACAGATCATGAAGCCCAGAGGCTACATAATGTTGAATTGGCCAAGATGCAAGAGGAGTCTTCTGTAAGAAAGGAGCGGGCAAGACAGGCTACTGAGGAACAGATTCAATCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACTATTAGAGTTAAGGCAATGGCTGAGGCTGAAGGCCGTGTTCATGAAGCTAAATTGACCGAGGAGCATAATAGGAGAATGATGATAGAACGACTGCAAGGTGAAAGGGATAAATGGCTTGCTGCAATTAACACAACTTTCAGTCATATTGAAGGTGGTCTAAGGGCCTTGTTGACTGATAGGGACAAATTGCTTATGACTGTTGGAGGAGCCACTGCACTAGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTCACCTGGGGCTATATTAATCGAATTTTAGGGCAGCCATCATTGATCCGGGAATCGTCAATGGCAAAATTCCCTGGATCAAAGATAATTTCTCAAGCCAAAAATAAACTTCTACATAGTAGTACTTTGGCTGGGGCAGAAAAACCTTTTGGGAATAAAAATGGTCTTGGAAATGTGATCCTCCATCCATCGCTACAGAGAAGAATTGAGCATCTTGCACGTGCAACATCAAATACCAAAGCCCATCAGGCACCATTTCGTAATATGCTTTTTTATGGGCCTCCAGGCACTGGTAAAACGATGGTTGCAAGGGAAATAGCGAGACGATCGGGTTTGGATTATGCCATGATGACCGGAGGAGATGTTGCACCTCTTGGCGCCCAGGCTGTTACCAAAATTCATGATATATTTGACTGGGCCAAGAAATCTAGGAAAGGCCTATTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGCAACAGCACACTCATGAGTGAAGCTCAGCGAAGTGCTTTAAACGCATTGCTCTTCAGAACTGGTGATCAGTCTCGAGACATAGTACTTGTTCTTGCGACAAACAGACCGGGTGATCTTGACAGTGCAGTTACTGATCGCATTGATGAAGTGATTGAATTTCCGCTTCCGGGAGAGGAAGAGCGTCTGAAGTTATTGAAGCTCTATTTAAACAAATATTTATGTGATGACAATAATGTTTCTAAGGGAGGCTTCTTGCTGAAGAAGCAGCCTCAGAAGATTACTATAAAAGATTTATCAGAGGATGACTTCAGAGAAGCTGCGAAGAAAACGGAGGGATTTTCAGGCCGTGAGATAGCCAAACTCATGGCTAGTGTCCAAGCTGCTGTCTATGGGCGCCCAGACTGCATCTTGGATTCCCAGTTGTTTAAAGAGATTGTAGATTACAAAGTGGTGGAACATCACCAACGACTAAAACTAGCAGCTGAAGGTGGCCAGCCCGGCCAAATATAG 2349 0.4568 MASSWTPRQNKLFEEALAIYDRDTPDKWQNVARVVGKSVEEVKTHFEILKEDVNRIERGQKEIDGSAEAISPGSLLNKEHLAKSPPPRIQNLFSRSGDKRHSFKRFNCSTRKALALSQASSCSIRKVHAKLWPLQVTSAAVVSMSTFSDRAYADSSFRFPFFSSSPSNAPSPPNQSSDTNSEPPAPEEPNKSGFDPESLERGAKALREINSSSYSKQVFDLMRKQEQTRLAELDAERVHYELIQSQGDIIKPHYEILGAVFQNAWHTCDMLLKPGGLERQRKMAEEQRNLIQEQAQRQAQVLRYEDELARKRMQTDHEAQRLHNVELAKMQEESSVRKERARQATEEQIQSQQRQTERERAEIERETIRVKAMAEAEGRVHEAKLTEEHNRRMMIERLQGERDKWLAAINTTFSHIEGGLRALLTDRDKLLMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSKIISQAKNKLLHSSTLAGAEKPFGNKNGLGNVILHPSLQRRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSTLMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNVSKGGFLLKKQPQKITIKDLSEDDFREAAKKTEGFSGREIAKLMASVQAAVYGRPDCILDSQLFKEIVDYKVVEHHQRLKLAAEGGQPGQI 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02960 782 FunFam Transcription factor SRM1 1 63 - -
Vimu7g02960 782 Pfam ATPase family AAA domain-containing protein 3, N-terminal 274 469 IPR021911 -
Vimu7g02960 782 Pfam ATPase family AAA domain-containing protein 3, N-terminal 179 249 IPR021911 -
Vimu7g02960 782 Gene3D - 3 51 - -
Vimu7g02960 782 PANTHER PUTATIVE ATP-ASE 149 776 - -
Vimu7g02960 782 SMART AAA_5 537 670 IPR003593 GO:0016887
Vimu7g02960 782 Pfam ATPase family associated with various cellular activities (AAA) 541 668 IPR003959 GO:0005524|GO:0016887
Vimu7g02960 782 MobiDBLite consensus disorder prediction 313 345 - -
Vimu7g02960 782 MobiDBLite consensus disorder prediction 164 197 - -
Vimu7g02960 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 764 IPR027417 -
Vimu7g02960 782 Coils Coil 327 369 - -
Vimu7g02960 782 MobiDBLite consensus disorder prediction 313 362 - -
Vimu7g02960 782 FunFam ATPase family AAA domain-containing protein 3 495 685 - -
Vimu7g02960 782 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Vimu7g02960 782 ProSitePatterns AAA-protein family signature. 640 659 IPR003960 GO:0005524|GO:0016887
Vimu7g02960 782 SMART sant 1 52 IPR001005 -
Vimu7g02960 782 Coils Coil 277 297 - -
Vimu7g02960 782 MobiDBLite consensus disorder prediction 164 186 - -
Vimu7g02960 782 Gene3D - 669 772 - -
Vimu7g02960 782 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Vimu7g02960 782 Gene3D - 498 668 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02960 Vimu-Chr7 24949368 24958972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02960 517 744 Miscellaneous Gene Families AT5G53170 29.289 9.72e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02960 K17681 - gmx:100777755 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02960 7 24949368 24958972 Vimu7g02960 7 24949368 24958972 ECH
Vimu7g02960 7 24949368 24958972 Vimu11g00638 11 6865100 6866918 PCT