Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02930 ATGGAGATACGTGGTGAAAAAGAGCAGTTTAACAAATATGCTTTTGCATGTGTTTTAGTCGCTTCCATGATATCCATTATATTTGGATATGATACCGGTGTTATGAGTGGAGCCATGATATTCATAAAGGAGGAGTTTGGAACCAGCGACACCCGACAAGAAATTCTTGCAGGCATCTTAAACCTTTGTGCATTGGTAGGTTCTTTAGCTGCAGGAAGAGCCTGTGATTACTTCGGTCGACGCTACACAATCTCTGTAGCCTCTTTCCTTTTCATGACGGGTTCAATTCTCATGGGATATGGTCCAAACTACGCAATTCTTATGCTGGGAAGATGTGTTGCGGGAATTGGCGTGGGTTTTGCCCTTATGATAGCGCCGGTTTATTCTGCAGAAATCTCATCTGCTAAATCCCGAGGCTTTCTAGCTTCCCTCCCTGAGCTTGGTATTGGTATTGGAATTTTACTTGGCTACGTTGCAAACTATTTCTTAGGTAAGTTGAGTTTGAAGGTTGGGTGGAGATTGATGCTTGGTATTGCAGCAGTTCCTTCACTTGTTCTGGCTTTAGGCATTCTCTTAATGCCCGAGTCTCCAAGGTGGTTGGTGCTGCAAGGCCATTTCGGAAAAGCCAAGAAAGTTTTGTTGAAAGTTTCAAATACCGAACAAGAAGCCGAGCTTCGGTTCAAGGATATAAAGATTGCTGCTGGGATAATTGAGGAGAATTGCCCTGAAGAAACAGTTAAGCTAGCACAAAAGAACAATGGTGAAGGGGTTTGGAAAGAGTTGCTTCTGAGACCCTCTTCTTCTGTTCGGTGGATGCTGATTGCAGCTGTGGGGGTTCACTTTTTTCAGCATGCTACTGGAATTGAAGCTGTGATGCTCTACAGTCCAAGAATCTTTAAGAAAGCAGGTGTTACCACTAAGGACAAGCTCCTGCTCACAACGATTGGAGTAGGCGTTACAAAAATCATTTTTTTGACCATAGCCACATTTTTTCTTGACAGAGTTGGGAGAAGACGCCTCTTGCTTTCAAGTACTGTAGGAATGGTTTGTAGTCTTGCAGTATTAGGATTCAGCTTGACCATGGTTCAGAGTTCCGAGGAAAAGCTCTTATGGGCCTTGACCCTCAGCATAGTGGCTACTTACTCATTTGTTGCTTCCTTTAATATGGGACTTGGACCTATCACATGGGTGTACAGCTCAGAGATTTTTCCTCTCAAGTTGAGAGCACAAGGAGTGAGTATAGGAGTTGCAGTTAACAGAGTTATGAATGCTGCAATTGCCATGAGTTTTATTTCAATCTACAAAACACTCACCATAGGAGGTGCCTTTTTCATGTTTGCTGCTATATCTATATTGGCTTTGTTCTTCTTCTACTTTTTCCTGCCTGAAACCAAGGGCAAGGCCTTGGAAGAGATGGAGATGGTTTTCAGCAAACACTATAGTAGAAATGTACCTGCTCAAACTGATCTCAGGCAGAATGTGTAA 1485 0.4296 MEIRGEKEQFNKYAFACVLVASMISIIFGYDTGVMSGAMIFIKEEFGTSDTRQEILAGILNLCALVGSLAAGRACDYFGRRYTISVASFLFMTGSILMGYGPNYAILMLGRCVAGIGVGFALMIAPVYSAEISSAKSRGFLASLPELGIGIGILLGYVANYFLGKLSLKVGWRLMLGIAAVPSLVLALGILLMPESPRWLVLQGHFGKAKKVLLKVSNTEQEAELRFKDIKIAAGIIEENCPEETVKLAQKNNGEGVWKELLLRPSSSVRWMLIAAVGVHFFQHATGIEAVMLYSPRIFKKAGVTTKDKLLLTTIGVGVTKIIFLTIATFFLDRVGRRRLLLSSTVGMVCSLAVLGFSLTMVQSSEEKLLWALTLSIVATYSFVASFNMGLGPITWVYSSEIFPLKLRAQGVSIGVAVNRVMNAAIAMSFISIYKTLTIGGAFFMFAAISILALFFFYFFLPETKGKALEEMEMVFSKHYSRNVPAQTDLRQNV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02930 494 SUPERFAMILY MFS general substrate transporter 7 473 IPR036259 -
Vimu7g02930 494 PRINTS Sugar transporter signature 25 35 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 PRINTS Sugar transporter signature 108 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 10 479 IPR045262 GO:0015144
Vimu7g02930 494 ProSitePatterns Sugar transport proteins signature 2. 113 138 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 NCBIfam sugar porter family MFS transporter 11 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 ProSiteProfiles Major facilitator superfamily (MFS) profile. 17 465 IPR020846 GO:0022857
Vimu7g02930 494 Pfam Sugar (and other) transporter 18 476 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu7g02930 494 FunFam probable polyol transporter 4 7 479 - -
Vimu7g02930 494 Gene3D MFS general substrate transporter like domains 6 480 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02930 Vimu-Chr7 24669854 24671593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02930 2 482 Organic Solute Cotransporters AT4G36670 65.217 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02930 - - gmx:102661233 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02928 7 24658794 24660134 Vimu7g02930 7 24669854 24671593 PCT