Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g02654 | ATGGCGCCAGTATCAGCTCTTGCAAAGTATAAACTGGTGTTTTTGGGTGATCAGTCTGTGGGAAAAACCAGTATCATCACACGTTTCATGTATGACAAATTTGACAACACTTATCAGGCCACGATTGGTATTGATTTTTTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGGCTGCAGCTGTGGGATACAGCTGGTCAAGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATTGCTTATGATGTTGCAAGTCGTCAGACTTTCCTAAACACATCAAAGTGGATTGAAGAGGTGCGAAGTGAGAGAGGCAATGATGTTATTATTGTACTTGTGGGGAACAAAACTGATCTTGTGGATAAGAGAGCCCTATGTTGTCCCTTGAAGGAAAGAGCTGGATTTGATCCTAGGCTTTGGTTGCTTGAACTGCAAGTCTCTACAGAGGAAGGGGAAGCCAAGTCTCGTGAACTAAACGTGATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTCAATATAAAGGCCCTATTCAGAAAAATTGCTGCTGCATTGCCTGGAATGGAAACACTATCTTCCACAAAACAAGATGACATGGTTGACGTGAACCTGAGATCTTCTGCTGGCCATGACTCTCAACCAGATTCAGGAGGATGTGCTTGCTGA | 684 | 0.424 | MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTSKWIEEVRSERGNDVIIVLVGNKTDLVDKRALCCPLKERAGFDPRLWLLELQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQDDMVDVNLRSSAGHDSQPDSGGCAC | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g02654 | 227 | SMART | rab_sub_5 | 10 | 194 | - | - | |
| Vimu7g02654 | 227 | NCBIfam | small GTP-binding protein domain | 9 | 186 | IPR005225 | GO:0005525 | |
| Vimu7g02654 | 227 | SMART | ras_sub_4 | 7 | 194 | - | - | |
| Vimu7g02654 | 227 | ProSiteProfiles | small GTPase Rab1 family profile. | 5 | 227 | - | - | |
| Vimu7g02654 | 227 | Gene3D | - | 6 | 220 | IPR027417 | - | |
| Vimu7g02654 | 227 | PANTHER | RAS-RELATED PROTEIN RAB | 10 | 201 | - | - | |
| Vimu7g02654 | 227 | PRINTS | Transforming protein P21 ras signature | 10 | 31 | - | - | |
| Vimu7g02654 | 227 | PRINTS | Transforming protein P21 ras signature | 169 | 191 | - | - | |
| Vimu7g02654 | 227 | PRINTS | Transforming protein P21 ras signature | 51 | 73 | - | - | |
| Vimu7g02654 | 227 | PRINTS | Transforming protein P21 ras signature | 33 | 49 | - | - | |
| Vimu7g02654 | 227 | PRINTS | Transforming protein P21 ras signature | 113 | 126 | - | - | |
| Vimu7g02654 | 227 | ProSiteProfiles | small GTPase Ras family profile. | 5 | 227 | IPR001806 | GO:0003924|GO:0005525 | |
| Vimu7g02654 | 227 | CDD | Rab6 | 10 | 191 | - | - | |
| Vimu7g02654 | 227 | SMART | rho_sub_3 | 12 | 193 | IPR001806 | GO:0003924|GO:0005525 | |
| Vimu7g02654 | 227 | ProSiteProfiles | small GTPase Rho family profile. | 3 | 197 | - | - | |
| Vimu7g02654 | 227 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 200 | IPR027417 | - | |
| Vimu7g02654 | 227 | SMART | ran_sub_2 | 15 | 210 | - | - | |
| Vimu7g02654 | 227 | Pfam | Ras family | 11 | 190 | IPR001806 | GO:0003924|GO:0005525 | |
| Vimu7g02654 | 227 | FunFam | Small GTP-binding protein, putative | 5 | 219 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g02654 | Vimu-Chr7 | 22389432 | 22392341 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g02654 | K07893 | - | gmx:100527651 | 376.711 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu7g02654 | 7 | 22389432 | 22392341 | Vimu7g02654 | 7 | 22389432 | 22392341 | ECH | |
| Vimu11g00249 | 11 | 2487347 | 2490616 | Vimu7g02654 | 7 | 22389432 | 22392341 | PCT |