Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00249 ATGAGTCGCAGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCATCTGTTGCTGTTATTGTTTATGATGTTGCAAGCCGCCAGACTTTCCTAAACACACCAAAGTGGATAGAAGAGGTGCGCAGTGAAAGAGGCAGTGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTGGACAAAAGGCAAGTGTCTACGGAGGAGGGGGAAGCAAAGTCCCGAGAGCTGAACGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGCTTCAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCCGGAATGGAGACACTATCTACCACAAAACAGGAAGATATGGTCGACGTGAACCTGAGGTCTTCTGGTAACCATGATTCCCAATCTGAGTCGGGGGGATGTGCTTGCTAA 444 0.4482 MSRRDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTPKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSGNHDSQSESGGCAC 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00249 147 ProSiteProfiles small GTPase Rab1 family profile. 1 147 - -
Vimu11g00249 147 SMART rab_sub_5 5 114 - -
Vimu11g00249 147 ProSiteProfiles small GTPase Ras family profile. 1 147 IPR001806 GO:0003924|GO:0005525
Vimu11g00249 147 PANTHER RAS-RELATED PROTEIN RAB 4 122 - -
Vimu11g00249 147 SMART rho_sub_3 2 113 IPR001806 GO:0003924|GO:0005525
Vimu11g00249 147 SMART ras_sub_4 1 114 - -
Vimu11g00249 147 FunFam Ras-related protein Rab-1B 1 114 - -
Vimu11g00249 147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 122 IPR027417 -
Vimu11g00249 147 NCBIfam small GTP-binding protein domain 5 107 IPR005225 GO:0005525
Vimu11g00249 147 Gene3D - 3 143 IPR027417 -
Vimu11g00249 147 Pfam Ras family 5 110 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00249 Vimu-Chr11 2487347 2490616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00249 K07893 - gmx:100790511 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00249 11 2487347 2490616 Vimu7g02654 7 22389432 22392341 PCT