Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02637 ATGTACAGAGAGCGAGGAGTGGGATCCAAATCGGAGGTAACTTCCGCTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACATCTAGAGCCGCCGGCATCAACGGCAAGGACCGCTCATCCTCCTCTTCTCTCTTAGCCGCCGCCGCCAAGGACTCCCGCTCCGCCTCCGTCACCGCCCCTATCTCCAAGAATTCCAACGCTTCTGACGAAGAGTCTGAAACAGACAGCGAGGAGTCTGATGTTAGCGGTTCCGATGGAGATGACACGTCTTGGATCTCGTGGTTCTGCAATTTGAGAGGAAATGAGTTCTTTTGCGAGGTTGATGACGATTACATCCAGGACGACTTCAACCTGTGCGGATTAAGCAGTCAAGTGCCTTACTACGATTATGCTCTGGATTTGATTTTGGATGTTGAGTCCTCCCATGGTAAGCTTATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCGAGAGTTTACTGCTCTGGACAACCTTGCATTCCAGTTGGTCAGTCAGACATCCCTAGATCCAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAGTATCCTTGGCCCTATTATATTATTGAACTTGTGTGGGTTTTAG 675 0.4948 MYRERGVGSKSEVTSADRKRINDVLDKQLERSSPSTSRAAGINGKDRSSSSSLLAAAAKDSRSASVTAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGKLMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGSILGPIILLNLCGF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02637 224 MobiDBLite consensus disorder prediction 1 95 - -
Vimu7g02637 224 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g02637 224 Pfam Casein kinase II regulatory subunit 153 212 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 Pfam Casein kinase II regulatory subunit 99 151 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 PANTHER CASEIN KINASE II SUBUNIT BETA 78 152 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 FunFam Casein kinase II subunit beta 164 217 - -
Vimu7g02637 224 ProSitePatterns Casein kinase II regulatory subunit signature. 167 198 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 MobiDBLite consensus disorder prediction 28 76 - -
Vimu7g02637 224 SUPERFAMILY Casein kinase II beta subunit 97 215 IPR035991 GO:0005956|GO:0019887
Vimu7g02637 224 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 153 IPR016149 GO:0005956|GO:0019887
Vimu7g02637 224 SMART CK_II_beta_2 99 224 IPR000704 GO:0005956|GO:0019887
Vimu7g02637 224 Gene3D - 161 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02637 Vimu-Chr7 22214014 22215660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02637 K03115 - gmx:100799304 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02637 7 22214014 22215660 Vimu7g02637 7 22214014 22215660 ECH
Vimu7g02637 7 22214014 22215660 Vimu7g02637 7 22214014 22215660 PCT
Vimu11g00228 11 2219080 2222094 Vimu7g02637 7 22214014 22215660 PCT