Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00228 ATGAATGATTACAAAGGAAGAGAAGGAGAAAGTGTTGTTGTTCGGAAGCGAATCAAAGATAAGACGCAGCACCAACAACATAATCACCGACGACAACCCAGTCCTTCCACTGCAAGGCCACCCCAGTTTCACCGTCGCTCCGTCTCCCTCCCTAACAATCAACACGAGGAATCTGAAACAGATAACGAAGGATCTGAAGTTAGTGTTTCAGAAGGGGATGACTCATGCTGGATCTCATGGTTTTGTAATTTGAAAGGAAATGAGTTCTTGTGTGAAGTCGATGATGATTTTGTGCAAGACGATTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCATTGGATTTAATTTTGGATGTTGAGCCCTCCCACGGAGACATGTTCACAGAGGAACAGAATGAGTTAATTGAATCTGCAGCGGAGATGCTTTATGGTCTGATTCATGCCAGGTACATTTTGACAAGCAAAGGAATGGCTGCAATGCTTCACAAGTTCAAAAACATGGACTTTGGCAGATGTCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGGCAGTCAGATATTCCTAGGTCAAGTAATGTAAAAATATTTTGCCCTAAGTGTGAAGACACTTATTACCCAAAGTCCAAGTACCAAGGTAGTATCCTTTGTTGA 675 0.4281 MNDYKGREGESVVVRKRIKDKTQHQQHNHRRQPSPSTARPPQFHRRSVSLPNNQHEESETDNEGSEVSVSEGDDSCWISWFCNLKGNEFLCEVDDDFVQDDFNLCGLSSQVPYYDYALDLILDVEPSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKFKNMDFGRCPRVYCSGQPCLPVGQSDIPRSSNVKIFCPKCEDTYYPKSKYQGSILC 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00228 224 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 69 173 IPR016149 GO:0005956|GO:0019887
Vimu11g00228 224 Gene3D - 174 222 - -
Vimu11g00228 224 FunFam Casein kinase II subunit beta 174 222 - -
Vimu11g00228 224 SUPERFAMILY Casein kinase II beta subunit 76 219 IPR035991 GO:0005956|GO:0019887
Vimu11g00228 224 ProSitePatterns Casein kinase II regulatory subunit signature. 177 208 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 PANTHER CASEIN KINASE II SUBUNIT BETA 55 222 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 MobiDBLite consensus disorder prediction 1 19 - -
Vimu11g00228 224 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 PRINTS Casein kinase II regulatory subunit family signature 76 92 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 PRINTS Casein kinase II regulatory subunit family signature 173 194 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 PRINTS Casein kinase II regulatory subunit family signature 148 169 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 PRINTS Casein kinase II regulatory subunit family signature 93 107 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 MobiDBLite consensus disorder prediction 1 68 - -
Vimu11g00228 224 Pfam Casein kinase II regulatory subunit 77 220 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 SMART CK_II_beta_2 76 219 IPR000704 GO:0005956|GO:0019887
Vimu11g00228 224 MobiDBLite consensus disorder prediction 29 49 - -
Vimu11g00228 224 FunFam Casein kinase II subunit beta 69 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00228 Vimu-Chr11 2219080 2222094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00228 K03115 - gmx:100789357 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00228 11 2219080 2222094 Vimu7g02637 7 22214014 22215660 PCT