Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02469 ATGGGTAAAGTTCAACATAAAATGTCTGAAGCAACCAATAGACAGATCAGCAATAGCACAAAATGCAATTCCAAACAGACCGTACAGAAATCAGATGAACATCCTGAATGGTTACCGGATGGTTGGATTGTGGACTCCAAAACACGAAAAAGTGGTGCACATATGGGATGTGGGTATAAGGTGTGTTACATTGACCCAACTGGACGCAAATTCTACTCCAAGCCAGAGGTGTTACGTTATATTAAGACTATAAACATCAACAGTCACAGTTCCAAGAAGGAAAAAATGCGCAAAAGCAATGATGCAGGTGAGAAATCCACTGCTGAGGATTTACCACCTGAGCAGATAATAGATGTCAAGATTAGGAGGGGTAGCAATGGCTGTAGAATAAAGCCGGATGCAGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGTTGGACGATAGAAGCCAAGGTTAGGAAGGGTGGTACTGGCAATAGGAAAGATCTGTTTTATATAGATCCGGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCACTACGCTATGTTAAGTCTGGTGATATAAGTTCGTGTGTGATTAAACCGTACAAGCAACAAATCCAAGATGAAGACAAAGTATCTAATGCAGATGAGAAGTCCACTATACAGGATTTACCACCTGGGCAGATAACAGAAGTCAAAATTAGGAAGGGCAGTAATGACAAAAGGATAGATCCGGATTGGGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGGTGGATAACAGAAGCCAAGGCTAGGAAGGGTGGTAGTGGCAAGAAGAAAGATCTGTTTTATGTAGATCCAGTGAGTGGATATGTATTTCGGTCCAAGAAGGATGCACTGCGCTATGTTAATTCTGGTGATATAGATACGTGCGTGCTTAAACCATATAAAAGAGGAACCCAAGATGAAGACGGAATAAGTTGCCTGGCTGGGAAGATAAAGGCGTGGAGTGGACTCCGGTGCCTAGCTAGAAGACAGAGTCGGTGGAGGGGTAAAAGAATCTGGAAGAGGCAGAAACTAACGCAGTCTGCAGCAAATCAACAGCTTTCTGTAGGTCAACCTGATGTGAAGAGCCAATCGTTAGAGCATGCAACTGCACTCACTCCCGAAATGATGAAAACATTTGATTCAGATGATGTGCTAGAGAATGACCACTTTGTGAATGTGATGGAGCATGCTAGTGAAAAGAATCACAGCAACAGTAGTTTATCCAAAACCAAGGAGTCCAATGTGGCTCGCCGTTTTTCACGGAGACTTTCTCGGGCTGAACCTGACCAATTGACCTACGTGGCCAATGAACAGGCTCTTCAAGTTCCTAAAAGAAAGTTGGGAAAAAGTGTAAGTATTTTAGACACTGATTTGACAAATAAATCATCTCAGCAGCTGAGTGGTGTACTGGAAATTAAGCGTTCATATAAAGAGCAAGGAGAAGTGCTATTGAACTCAAAAAAATCCAGAACCAAGGAAGAGAAACAAACTTTTTGTCGTTCTTCAAAACGATTAGCTGGATTTCAACCCAAGCTGACGAGCAACTCTAGTTCCCAAAAAACATCTTATAAAAGTAAAAAATATAAAGGTGATGTCAAAGCAACCTTGCAGCAAAGTGATGGTCAGCCAGTTACGGAGTTTGCAGATCATGCATCAATAAATAGAGAGTCGTCAAATAAAGGCAGAAAACTTCCCAAAGCCACACCCATAACTAGCAATCAACTGAAGAAATTTGATGACGAAGAAAAAAATAACAATGGGAAATCAGAACTTGATCAATCCTTTGCATTTCATTATTCTTGGTCTGACCCATGCTTGGAATTTGCAATTCAGACCCTCACAGGTGCATTACCAGTTGAAGATTCAACTGACAATGGACAAACCAGGGTTTCTGAAACTGTTACAGCTCCCAAAAATCAGTTGGTGGAGAATGTTACAGGAAGCAGCAGTGACAAAACCTCACGTGTAAATTCAAAGCAATCCAAGAACAAAAAAGAGCTTACAGTGCCAAGGCGGTTGTCAAAGCGACTTGCTGGCAATGAACCCGAGGTACTTCCTACTGAAAAAGCTGCCGAATTCGCCCCTCAAAAGTCCTGCAATGACAAACTGGCTGCTACTGCGAATTTAACTAATGGAGTGTCTGGGTATCATCGTGACAGGGAAGAGTCCGAACTTGTTGTCCAGTCATCTGACAGGTTGAAAACATTATGTGGTGAATCATTGATCAAGAATGAGAAGTCATATGATGTCCAAACGGTTCCCAATGAACAAATACAGAGGCATGAAGATGAAAATGCCGATGATGAAAGATCGTATTCACAGTTCCCCACACCTTTTGGGGACTCCTGGTCGGATCCTTGCCTTGAATTTGCAATTAAGACTCTTTCAGGTGATTTGCCAGTTGACGCACCAGCTGCGGACATTTTACCTGTTGTTACTCCTGATGTTAGTGATCCCCCAAATAAGGAGTCACTTCAGAGTATGGAGCAGAAGAGCATCAATGCAGAAACTCGTGATAATCCCTACCAATCCCTGACCGAGAAAGAGTTTAATACTGTTTGCCACACATCAAAACAAGACCTGAACCAGCCCGAGGTGACAACCTACTCCACATCTTTTGGAAATGATCCGAAGTTTGCAACTAGAGAGTCTTACAAGGATGAAGACGGTATAACCAGGAATTCTAACGAAAGAGAACCCCAGCGTATTAAATCTGGGAACGCACTAGAAATTGATATAAACAAAACAATTCTTGAAGAAGAACCACAACCTGAAACAATAAACTACGATAATTCTGACAGAGAATTCGGTGCTTCATTTATGGATTCTTGGTCAGATCCATGCCTAGAATTTGCATTTAATACTCTTTCAGGCTCAATACCAGTAGAGGAAAATATAACAATTCAAGCATGTTTCCAGGAACGTCCCCATAGCAATGGCCAAAGAGGGGGTTTCTCGACAGTACCGGATTTTGGATTTTCCAGCATTTCTCATGGTGGTATCTCATTTCACAATAATATGGGGGAGAATTCCAAGTCAGTTCAACAGTCATCAGCGAGTTCTTCTTTCCTCCCCCAGGAAAAACAAGGCCTGAACGCTTTCTTCGGGGTTGATCCTCAAGAACAATATTTCCAGAATAATAATAATTTTCAGAGAAAGTGA 3183 0.4207 MGKVQHKMSEATNRQISNSTKCNSKQTVQKSDEHPEWLPDGWIVDSKTRKSGAHMGCGYKVCYIDPTGRKFYSKPEVLRYIKTININSHSSKKEKMRKSNDAGEKSTAEDLPPEQIIDVKIRRGSNGCRIKPDAVEKSQVEDLPPGWTIEAKVRKGGTGNRKDLFYIDPVSGYVFRSKKDALRYVKSGDISSCVIKPYKQQIQDEDKVSNADEKSTIQDLPPGQITEVKIRKGSNDKRIDPDWVEKSQVEDLPPGWITEAKARKGGSGKKKDLFYVDPVSGYVFRSKKDALRYVNSGDIDTCVLKPYKRGTQDEDGISCLAGKIKAWSGLRCLARRQSRWRGKRIWKRQKLTQSAANQQLSVGQPDVKSQSLEHATALTPEMMKTFDSDDVLENDHFVNVMEHASEKNHSNSSLSKTKESNVARRFSRRLSRAEPDQLTYVANEQALQVPKRKLGKSVSILDTDLTNKSSQQLSGVLEIKRSYKEQGEVLLNSKKSRTKEEKQTFCRSSKRLAGFQPKLTSNSSSQKTSYKSKKYKGDVKATLQQSDGQPVTEFADHASINRESSNKGRKLPKATPITSNQLKKFDDEEKNNNGKSELDQSFAFHYSWSDPCLEFAIQTLTGALPVEDSTDNGQTRVSETVTAPKNQLVENVTGSSSDKTSRVNSKQSKNKKELTVPRRLSKRLAGNEPEVLPTEKAAEFAPQKSCNDKLAATANLTNGVSGYHRDREESELVVQSSDRLKTLCGESLIKNEKSYDVQTVPNEQIQRHEDENADDERSYSQFPTPFGDSWSDPCLEFAIKTLSGDLPVDAPAADILPVVTPDVSDPPNKESLQSMEQKSINAETRDNPYQSLTEKEFNTVCHTSKQDLNQPEVTTYSTSFGNDPKFATRESYKDEDGITRNSNEREPQRIKSGNALEIDINKTILEEEPQPETINYDNSDREFGASFMDSWSDPCLEFAFNTLSGSIPVEENITIQACFQERPHSNGQRGGFSTVPDFGFSSISHGGISFHNNMGENSKSVQQSSASSSFLPQEKQGLNAFFGVDPQEQYFQNNNNFQRK 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 404 426 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 89 108 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 8 26 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 539 594 - -
Vimu7g02469 1060 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 101 IPR001739 GO:0003677
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 652 676 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 887 907 - -
Vimu7g02469 1060 Pfam Methyl-CpG binding domain 142 188 IPR001739 GO:0003677
Vimu7g02469 1060 Pfam Methyl-CpG binding domain 34 83 IPR001739 GO:0003677
Vimu7g02469 1060 Pfam Methyl-CpG binding domain 251 297 IPR001739 GO:0003677
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 404 420 - -
Vimu7g02469 1060 SUPERFAMILY DNA-binding domain 251 299 IPR016177 GO:0003677
Vimu7g02469 1060 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 133 205 IPR001739 GO:0003677
Vimu7g02469 1060 PANTHER OS04G0193200 PROTEIN 14 207 IPR038945 -
Vimu7g02469 1060 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 242 314 IPR001739 GO:0003677
Vimu7g02469 1060 SUPERFAMILY DNA-binding domain 32 88 IPR016177 GO:0003677
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 876 907 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 89 113 - -
Vimu7g02469 1060 SUPERFAMILY DNA-binding domain 142 193 IPR016177 GO:0003677
Vimu7g02469 1060 Gene3D - 231 318 - -
Vimu7g02469 1060 Gene3D - 118 217 - -
Vimu7g02469 1060 Gene3D - 1 116 - -
Vimu7g02469 1060 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02469 Vimu-Chr7 21107493 21116712 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02469 - - vra:106777576 1915.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02469 7 21107493 21116712 Vimu11g04367 11 64973429 64979466 PCT