Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02313 ATGGCATCAAAAATGTTTAGAGCAAGCCGATCATCTATATCAACATCATCTGATGCAGCTGATGGCCAGAAGCCTCCTTTACCTCCGAGTGTACAATTTGGGCGGAGAACTTCCTCAGGTCGCTATGTCAGTTACTCTAGAGATGATCTTGACAGTGAAATAGGGAGCACAGACTTCATGAATTATACAGTGCATATACCAGCCACCCCAGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTTTTCACAGGTGGATTCAACAGCGTTACTCGAGCCCATCTAATGGATAAGGTGATAGAATCTGAAGCAAATCATCCACAGATGGCCGGTGCAAAAGGGTCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGTGATGAACGTGGTGCTGATATTCTTCCCTGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTGAAAACAGGAGGTGGTATTTGCCCAGGATGCAAGGAACCGTATAAGAACACAGAATTAGATGAAATGGCTGTAGATAATGGACGTCCTCTTCCACTTCCTCCACCTGGTGGAATGTCTAAAATGGAGAAGAGATTGTCCTTGATGAAGTCAACGAAATCAATGTTAATGAGGAGCCAAACTGGAGACTTTGATCATAACCGGTGGCTCTTTGAAACAAAGGGGACCTATGGCTATGGTAATGCTATATGGCCAAAGGAAGGAGGTTTTGGAAATGAAATAGAGGATGATGCTGTTGAGCCAACTGAATTGATGAACAGACCTTGGAGACCACTTACTAGGAAACTGAAGATTCCTGCTGCTATTTTGAGTCCATATCGTCTTATCATTTTCATTCGTTTGGTTGTATTGGCACTGTTCTTGGCATGGAGGGTCAAACACCAAAATACTGATGCAGTATGGCTATGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGCTTCTGGATCAACTGCCCAAACTATGCCCAGTGAATCGTTCCACAGATCTTAATGTTCTAAAGGAGAAATTTGAAACACCCACCCCTAACAATCCAACTGGAAAATCTGATCTTCCAGGAATAGATATATTTGTTTCTACTGCAGATCCTGAGAAAGAACCTCCTCTTGTAACTGCAAACACTATCCTGTCTATTTTAGCTGCTGATTACCCTGTGGAGAAGCTTTCTTGTTATGTTTCTGATGATGGAGGTGCGCTCCTAACTTTTGAGGCAATGGCTGAAGCTGCTAGCTTTGCTAATACATGGGTTCCCTTTTGCCGTAAACATGATATAGAGCCTAGGAATCCTGAATCATACTTCAACTTAAAAAGAGACCCTTACAAAAACAAAGTGCGGCCTGATTTTGTCAAGGATCGAAGACGAGTAAAGCGTGAGTATGATGAATTTAAGGTTAGGATCAATGGTCTGCCGGAATCTATTCGTCGCCGATCTGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAATAGGGGAGATGAACCTCAAGAAACGGTAAAGATTCCTAAAGCAACATGGATGGCTGATGGAACACATTGGCCAGGAACTTGGTTGAATCCTACATCTGAGCATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAGCCTCCTAGCGATGAACCTCTCCCAGGAAATGCAGATGATACAAGTCTCATAGACCTAACTGATGTTGATATACGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGACCAGGCTATGATCACAACAAGAAAGCTGGCGCCATGAATGCCTTGGTTCGAGCATCGGCAATTATGTCTAATGGTCCATTTATTCTGAATCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGCATGTGCTTTATGATGGATCGTGGCGGCGATCGCCTTTGTTACGTCCAGTTCCCCCAAAGGTTTGAAGGGATTGATCCCTCTGATAGATATGCCAATCACAATACTGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGACTTCAAGGGCCGGTGTATGTGGGAACAGGGTGCCTTTTCAGACGGATTGCACTATATGGTTTTGAGCCACCTCGTTCCAAAGAGCACCACACAGGTTGTTGTAATTGTTGCTTTGGTCGTCAGAAGAAACATGCATCAATGGCAAGCACCCCAGAAGAGAGTCGGGCATTGAGGATGGGTGATTCTGATGAGGAGGAGATGAATCTATCACTGTTCCCGAAGAAGTTTGGAAACTCAACTTTCCTTGTTGACTCTATTCCTGTGGCTGAATTCCAAGGCCGGCCACTGGCCGATCACCCTGCCGTGAAAAATGGACGTCCACCCGGTGCTCTCACCATCCCCCGCGATCTTCTCGATGCATCGACGGTGGCAGAGGCCATCAGTGTCATCTCCTGTTGGTACGAGGACAAGACCGAGTGGGGAAACCGTGTCGGGTGGATCTATGGCTCTGTGACGGAGGATGTGGTGACCGGGTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTGACCAAACGTGATGCCTTCCGTGGAACTGCTCCCATCAATCTTACTGACAGGTTGCATCAAGTTCTCAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCAAGAAACAATGCTTTGTTGGCCAGCCCAAGAATGAAAATTCTTCAAAGAATTGCATATCTCAATGTTGGAATCTACCCTTTCACATCCATATTTCTAATTGTCTACTGCTTCCTTCCTGCATTGTCCCTTTTCTCTGGGCAGTTCATCGTGCAGACCCTCAATGTCACTTTTCTTTCATACCTCTTAGGCATCACTGTAACACTCTGCATACTTGCAGTGCTTGAGATTAAGTGGTCAGGCATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTCTGGCTGATTGGAGGGACAAGTGCTCATCTTGCTGCTGTGCTTCAAGGTTTGCTGAAAGTGATAGCAGGAATTGAAATCTCATTCACCTTGACTTCAAAGTCAGGTGGCGATGATGTAGATGATGAATTTGCTGATCTGTATATTGTGAAATGGACATCCCTCATGATACCACCTATCACAATCATGATGGTTAACCTGATAGGAATAGCAGTTGGAGTTAGCAGAACCATTTACAGTGTGATACCACAATGGAGCCGTCTACTGGGTGGTGTGTTCTTCAGTTTTTGGGTCTTGGCTCATCTCTATCCCTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGAACACCTACCATAGTTTTTGTATGGTCAGGCCTCATTTCCATCACAATTTCTCTCCTCTGGGTTGCCATCAACCCTCCTGCTGGTTCTAATCAGATTGGTGGTTCATTCCAGTTTCCTTGA 3432 0.4443 MASKMFRASRSSISTSSDAADGQKPPLPPSVQFGRRTSSGRYVSYSRDDLDSEIGSTDFMNYTVHIPATPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKEPYKNTELDEMAVDNGRPLPLPPPGGMSKMEKRLSLMKSTKSMLMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEIEDDAVEPTELMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVVLALFLAWRVKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANTWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAYHAREEIKAMKVQRQNRGDEPQETVKIPKATWMADGTHWPGTWLNPTSEHSKGDHAGIIQVMLKPPSDEPLPGNADDTSLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFEPPRSKEHHTGCCNCCFGRQKKHASMASTPEESRALRMGDSDEEEMNLSLFPKKFGNSTFLVDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAINPPAGSNQIGGSFQFP 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02313 1143 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1113 - -
Vimu7g02313 1143 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g02313 1143 SUPERFAMILY RING/U-box 112 181 - -
Vimu7g02313 1143 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 714 IPR029044 -
Vimu7g02313 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Vimu7g02313 1143 Pfam Cellulose synthase 373 1133 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu7g02313 1143 SUPERFAMILY Nucleotide-diphospho-sugar transferases 388 937 IPR029044 -
Vimu7g02313 1143 FunFam Cellulose synthase-like protein D3 110 192 - -
Vimu7g02313 1143 FunFam cellulose synthase-like protein D3 578 715 - -
Vimu7g02313 1143 MobiDBLite consensus disorder prediction 1 44 - -
Vimu7g02313 1143 Pfam RING/Ubox like zinc-binding domain 129 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02313 Vimu-Chr7 19955899 19959546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02313 2 1143 Glycosyltransferase AT3G03050 84.160 0.0 2030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02313 K20924 - gmx:100792604 2263.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02662 5 36608744 36613130 Vimu7g02313 7 19955899 19959546 ECH
Vimu7g02313 7 19955899 19959546 Vimu7g02313 7 19955899 19959546 ECH