Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02662 ATGAAGAAGAACCCTGGATCTCGTACTGGAGCTGAGTCTGTATCCTTTCATAGGACCTTTAAGATTAATCTTTTTCCTTCGAATATGTCATCAAAACCATTCAAACCAAGCCGGTTATCTCATTCTCAGTCAGCAACTTCTGAGGCATCTGATGGCCCGAAGCCTCCTTTGCCTCCAACCGTAACGTTTGGGCGAAGGACTTCTTCGGGTCGCTACATCAGCTACTCAAGAGATGATCTTGACAGTGAACTTGGGAGTAGTGATTTCATGAATTACACAGTGCATATGCCTCTGACTCCTGATAACCAACCTATGGATCCATCAATTTCACAGAAAGTCGAGGAGCAATATGTGTCAAGCTCCCTTTTCACGGGAGGATTCAACAGTGTTACTCATGCCCACCTAATGGATAAGGTGATAGAATCCGAAGCTAGCCATCCACAGATGGCTGGTGCAAAAGGGTCTTCGTGTGCAGTTCCTGGTTGTGATTGTAAGGTGATGAGTGATGAACGTGGTGCGGATATTCTACCTTGTGAGTGTGACTTTAAGATATGTAGAGACTGCTATATAGATGCTGTAAAAGCAGGAGATGGAATGTGCCCGGGATGCAAAGAGCCTTACAAAAGCACAGAGCTAGATGAGGTTGCTGTGGATGAACGAAATGGAAGACCATATCCGCTTCCTCCCTCAAGTGGAGTGTCTAAAATGGAGAGGAGATTGTCCTTGATGAAGTCGACAAAGTCAGCTCTAATGAGAAGCCAGACTGGAGATTTTGATCACAATCGTTGGCTCTATGAAACAAAGGGTACCTATGGCTATGGTAATGCTATTTGGCCAAAGGGAGGAAATTTTGGAAGTGGTAATGGGGATGATGATGTTGTTGAGCCAATGGATCTGATGAACAGACCCTGGAGGCCACTTACCAGGAAACTCAAGATACCTGCTGCTGTTCTTAGCCCATATCGTCTCATCATATTCATTCGGTTGGTTGTCCTGGTACTGTTCTTGGCATGGAGGGTGAAGCACAAAAATACTGATGCAATTTGGCTATGGGGCATGTCTGTGGTTTGTGAGATATGGTTTGCTTTTTCTTGGCTTCTGGATCAACTACCCAAGCTATGCCCAATAAATCGTGCCACAGATCTCAATGTTCTGAAGGAAAAATTTGAAGTGCCAAGTCCCAACAATCCTACTGGAAAATCAGATCTTCCAGGCATAGATGTCTTTGTTTCTACTGCTGATCCTGAGAAAGAACCACCTCTTGTCACTGCAAACACCATATTATCAATCCTAGCTGCAGACTATCCAGTTGAGAAACTTTCTTGCTATGTTTCTGATGATGGAGGTGCACTCTTGACATTTGAGGCAATGGCCGAAGCTGCCAGCTTTGCTAATGTGTGGGTTCCATTCTGCCGTAAGCATAATATAGAGCCTAGGAATCCTGAATCATATTTCAACTTAAAGAGAGATCCCTACAAAAACAAAGTGAAACCAGATTTCGTCAAGGATCGTAGACGAGTGAAGCGTGAGTATGATGAGTTCAAGGTCAGGATCAATGGTCTGCCTGATTCTATCCGGCGTCGGTCAGATGCCTTTCATGCAAGAGAGGAATTGAGGGCTATGAAACTGCAGAGACAAGCTAAGGTAGATGAACCTGTTGAACCGGTAAAGATTCCAAAAGCCACATGGATGGCTGATGGAACTCACTGGCCAGGGACTTGGTTGAATCCTTCATCCGAGCACTCTAAAGGTGATCATGCCGGTATAATCCAGGTGATGTTGAAACCTCCAAGTGATGAACCTCTCCTTGGAAATGCTGACGACCAAAAGCTTATTGACTTGGTTGATGTAGATATCCGTCTCCCCCTTCTTGTTTATGTTTCTAGAGAGAAACGTCCAGGCTATGATCACAACAAAAAAGCTGGGGCCATGAATGCCTTAGTTCGAGCCTCAGCCATCATGTCCAATGGTCCTTTTATACTCAATCTTGATTGCGACCACTACATCTACAACTCCAAGGCAATGAGAGAAGGTATGTGCTTTATGATGGACCGTGGTGGTGACCGCATTTGCTATGTTCAATTCCCACAAAGATTTGAGGGGATTGATCCTTCCGACAGATATGCCAATCATAACACCGTATTCTTTGATGTCAACATGAGAGCACTAGATGGACTTCAAGGTCCAGTCTATGTAGGAACCGGTTGCCTTTTCAGAAGGGTCGCTCTTTACGGTTTTGATCCTCCCCGCTCTAAGGAACATCATTCTGGATGTTGTAGTTGCTGTTTTGGCAAAAGAAAAAAGAATGCTAATGTCTCTGAAGAGAATCGGGCACTGAGGATGGGTGACTCCGAGGACGAAGAAGAAGAAATGAATCTATCACTGTTTCCTAAGAGGTTTGGAAACTCAACTTTCCTGATTGACTCAATTCCAGTGGCAGAGTTCCAAGGCAGGCCACTTGCTGATCACCCTGCAGTGAAGAATGGACGCCCTCCTGGCGCCCTCACCATACCACGTGAGCTTCTTGATGCATCAACTGTGGCAGAGGCCATCAGTGTGATCTCTTGCTGGTACGAGGATAAAACCGAATGGGGACAGCGTGTTGGATGGATCTATGGATCAGTTACTGAGGATGTGGTTACTGGCTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTTACCAAGCGTGATGCATTCCGTGGCACTGCTCCCATAAATCTCACTGACAGATTACATCAAGTCCTTAGATGGGCAACTGGGTCGGTTGAAATATTCTTCTCAAGAAACAATGCATTTCTGGCTAGCCCAAGAATGAAGTTTCTCCAACGGATTGCATACCTTAATGTTGGAATCTATCCATTCACTTCATTTTTCCTTATTGTCTACTGCTTCCTCCCTGCACTTTCCCTCTTCTCTGGCCAATTCATTGTTCAAACTCTCAACGTCACTTTCCTTGTTTATCTCTTGACCATCACTGTGACTTTGTGCATGCTGGCTGTGCTTGAAATCAAGTGGTCCGGCATTGAGCTGGAAGAGTGGTGGAGAAATGAGCAGTTTTGGTTGATTGGAGGAACAAGTGCACATCTAGCCGCTGTGCTGCAGGGTTTGCTCAAAGTGATAGCAGGGATTGAAATCTCTTTCACCTTGACATCAAAATCTGGTGGGGATGATGTAGATGATGAGTTTGCTGATCTATATATTGTGAAGTGGACATCCCTTATGATACCACCAATCACAATTATGATGGTTAACCTGATAGGAATAGCAGTTGGAGTTAGCAGAACCATATACAGTGTGATACCTCAGTGGAGCCGTCTACTTGGTGGTGTTTTTTTCAGTTTTTGGGTCTTGACCCATCTTTACCCTTTTGCAAAAGGTTTGATGGGAAGGAGAGGGAAGACACCTACCATTGTTTTTGTATGGTCAGGTCTCATAGCAATCACAATATCACTCCTTTGGGTGGCCATCAATCCCCCTGCTGGTACCAACCAAATCGGTGGTTCATTCCAGTTCCCATGA 3528 0.4484 MKKNPGSRTGAESVSFHRTFKINLFPSNMSSKPFKPSRLSHSQSATSEASDGPKPPLPPTVTFGRRTSSGRYISYSRDDLDSELGSSDFMNYTVHMPLTPDNQPMDPSISQKVEEQYVSSSLFTGGFNSVTHAHLMDKVIESEASHPQMAGAKGSSCAVPGCDCKVMSDERGADILPCECDFKICRDCYIDAVKAGDGMCPGCKEPYKSTELDEVAVDERNGRPYPLPPSSGVSKMERRLSLMKSTKSALMRSQTGDFDHNRWLYETKGTYGYGNAIWPKGGNFGSGNGDDDVVEPMDLMNRPWRPLTRKLKIPAAVLSPYRLIIFIRLVVLVLFLAWRVKHKNTDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLNVLKEKFEVPSPNNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHNIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAFHAREELRAMKLQRQAKVDEPVEPVKIPKATWMADGTHWPGTWLNPSSEHSKGDHAGIIQVMLKPPSDEPLLGNADDQKLIDLVDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRVALYGFDPPRSKEHHSGCCSCCFGKRKKNANVSEENRALRMGDSEDEEEEMNLSLFPKRFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASPRMKFLQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLTITVTLCMLAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLTHLYPFAKGLMGRRGKTPTIVFVWSGLIAITISLLWVAINPPAGTNQIGGSFQFP 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02662 1175 SUPERFAMILY RING/U-box 146 211 - -
Vimu5g02662 1175 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 610 747 IPR029044 -
Vimu5g02662 1175 MobiDBLite consensus disorder prediction 26 50 - -
Vimu5g02662 1175 FunFam Cellulose synthase-like protein D3 140 223 - -
Vimu5g02662 1175 FunFam cellulose synthase-like protein D3 611 748 - -
Vimu5g02662 1175 Pfam Cellulose synthase 406 1166 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu5g02662 1175 MobiDBLite consensus disorder prediction 26 68 - -
Vimu5g02662 1175 SUPERFAMILY Nucleotide-diphospho-sugar transferases 421 747 IPR029044 -
Vimu5g02662 1175 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 305 1151 - -
Vimu5g02662 1175 Pfam RING/Ubox like zinc-binding domain 159 208 - -
Vimu5g02662 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02662 Vimu-Chr5 36608744 36613130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02662 30 1175 Glycosyltransferase AT3G03050 84.133 0.0 2037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02662 K20924 - gmx:100792604 2164.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02662 5 36608744 36613130 Vimu7g02313 7 19955899 19959546 ECH
Vimu5g02662 5 36608744 36613130 Vimu5g02662 5 36608744 36613130 ECH