Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02160 ATGGAAGCGGAAGCGCGTAGAAGTTCGGACTTGAAGATTAGGTTCGGAGAAGAAGGTGGGAAGCACTGGACTGATGCGCTTCCCATTGGCAATGGACGCCTCGGAGCCATGATCTGCGGCCGCCTCCATTCCGAAACCATCCACCTCAACGAGGACACGCTCTGGACCGGAACACCCGCGGACTACACTAATTCTAAAGCTCCACAAGCCCTTTCTCTGGTTAGAAACCTCGTTAACCGTCAACAATATCCACAAGCCACTGCTGCTGCTTCTGCCTTAACAGGATCAAATCCATCCGAGGCCTACCAACTTCTTGCCGATATCAAATTGGACTTCGATTATTCACATCTCACCGGCGCTCAACAAACTTACCAGAGGGAGCTGGACTTGGATACTGCTACTGTCAAGGTCAGCTATTCCGTTGGAGATGTTCAGTTCAAAAGGGAGCATTTTGCCTCCTATCCAGATCAAGTCATTGTCACTAATATTTCCGCCACTCAAAAGGCCAGACTTTCATTCACGCTTTCTCTGGACAGCAAAATGATTAATCAAACCTGCCTAAATGGCACCAATCAGATTATAATGAAGGGAGCGTGTCGTGGTAAAAGGTTCCCACCTCAACTCCAACACAGCGCACAAGATACTCCGCAGGGAATTCAATTCTCGGCAATTCTTGATTTGAAGATTGGTGGTGCAAATGGCGTCATCAGTGTTTTGGATGACAACAAGTTGAAGGTTGAGGCTTCAGATTGGGCTGTTTTACTTCTCGTTGCTTCCTCCTCCTTCAGTGGCCCATTCACATCACCTTCAGATTCTAAAAGGGATCCTACTTCTGAGTGTTTCAGTGTATTGAGCTCAATAGGCAATGTATCATATTCTGACCTCTATGCACGCCATTTAAATGACTATCAAGAACTTTTTCACCGGGTATCGCTGAAGCTTATGAGAAGCACCCAGCTGAATATGCCAGAAGACAGCTCTTTGGAATTGAAGACGCTTGCGCCAACGGTAGCTAGTCTGTCTCTAGTGGACAGTGAAACTCAAGTTTCAACCTCTGACAGGGTGAAATCATTTCAGACGGACGAAGATCCATCCTTGGTGGAACTTCTATTTCAATATGGTCGGTATTTGCTTATTTCTTCTTCGCGCCCTGGAACTCAGGTGGCAAACCTACAGGGAATTTGGAACAAAGATCTTGAGCCTATTTGGGATGGAGCTCCCCACTTGAACATCAATCTTGAAATGAACTATTGGCATGCTCTTCCTTGCAATCTAAGCGAGTGTCAAGAACCCTTGATTGATTATATTTCCTCTCTGTCTGTGAATGGCAGTAAAACAGCATATGTGAATTACCAAGCAAGTGGATGGGTAGCACATAGTAAATCAGATATATGGGCAAGAACATCAGCAGGTCATGGTGATGTTCTGTGGGCCTTATGGCCAATGGGTGGAGCATGGCTTTGTACCCATCTATGGGAGCACTATGCTTACACGATGGATAAGGGTTTCCTTGAATATAAAGCATATCCCATAATGGAAGGATGTGTCTCATTTCTGTTGAGCTGGCTGATAGAAGACAATGAAGGATATCTTGAAACTAATCCATCAACTTCCCCTGAACACAATTTTATTGCTCCAAATGGTGAGCCTGCATGTGTAAGCCAGTCATCCACAATGGATGTGGCAATCGTACATGAAGTCTTCTCTACATTTCTTTCTGCTGCTGAGGTTGTAGGGAGAACAAATGATAATATTGTCAGGAAAGTTTGTAAAGCTCAACCACGGTTACGTCCACTCTATATTGCCCAAGATGGTTCCATTATGGAATGGGTGAAAGATTTCAAGGATCCAGAGGTACGTCACCGGCACCTTTCACATCTATTTGGTCTATTTCCAGGGCATACAATTACTTTGGAGCAAACTCCAGCTCTGTTTGAAGCTGCTGAGAAAAGCCTCTATAAACGAGGAGAGGAAGGTCCTGGGTGGTCAACCGCGTGGAAAACTGCTTGCTGGGCACGTCTACAGAACAGTTCGAATGCATATAAGATGATCAAGCGCTTGATAAACTTGGTGGATCCGGATCACGAGATACCGTTTCAAGGTGGACTGTACAGCAACCTGTTTGCAGCGCACCCTCCATTTCAGATCGATGCCAACTTCGGTTTTCCAGCGGCAGTTGCCGAAATGCTTGTGCAGAGTACATTGAGCGATCTTTTCTTACTTCCTGCTCTTCCATGGGAGAAATGGCCAAATGGCTCCTTGAAAGGCTTGAAGGCTCGTGGAGGAACAACAGTTAACATATGCTGGAGAGAAGGGGATCTTCAGGAGTTTGGTGTATGGTCCGAGGACCAAACAAGAACAACTCTGAGAAAAAGAATACACTATAAAGAAACTATGGTCACCACAGACTTAATGACTGGCGTTTTTTACATGTTCAACGGACAGTTGAAGTGTTTGAACTCATGCTCTCTTTCAGAAATGGCGTCTTCTTGA 2493 0.4541 MEAEARRSSDLKIRFGEEGGKHWTDALPIGNGRLGAMICGRLHSETIHLNEDTLWTGTPADYTNSKAPQALSLVRNLVNRQQYPQATAAASALTGSNPSEAYQLLADIKLDFDYSHLTGAQQTYQRELDLDTATVKVSYSVGDVQFKREHFASYPDQVIVTNISATQKARLSFTLSLDSKMINQTCLNGTNQIIMKGACRGKRFPPQLQHSAQDTPQGIQFSAILDLKIGGANGVISVLDDNKLKVEASDWAVLLLVASSSFSGPFTSPSDSKRDPTSECFSVLSSIGNVSYSDLYARHLNDYQELFHRVSLKLMRSTQLNMPEDSSLELKTLAPTVASLSLVDSETQVSTSDRVKSFQTDEDPSLVELLFQYGRYLLISSSRPGTQVANLQGIWNKDLEPIWDGAPHLNINLEMNYWHALPCNLSECQEPLIDYISSLSVNGSKTAYVNYQASGWVAHSKSDIWARTSAGHGDVLWALWPMGGAWLCTHLWEHYAYTMDKGFLEYKAYPIMEGCVSFLLSWLIEDNEGYLETNPSTSPEHNFIAPNGEPACVSQSSTMDVAIVHEVFSTFLSAAEVVGRTNDNIVRKVCKAQPRLRPLYIAQDGSIMEWVKDFKDPEVRHRHLSHLFGLFPGHTITLEQTPALFEAAEKSLYKRGEEGPGWSTAWKTACWARLQNSSNAYKMIKRLINLVDPDHEIPFQGGLYSNLFAAHPPFQIDANFGFPAAVAEMLVQSTLSDLFLLPALPWEKWPNGSLKGLKARGGTTVNICWREGDLQEFGVWSEDQTRTTLRKRIHYKETMVTTDLMTGVFYMFNGQLKCLNSCSLSEMASS 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02160 830 Pfam Glycosyl hydrolase family 65, N-terminal domain 20 263 IPR027414 -
Vimu7g02160 830 SUPERFAMILY Six-hairpin glycosidases 274 776 IPR008928 GO:0005975
Vimu7g02160 830 PIRSF UCP007663 1 812 IPR016518 GO:0004560
Vimu7g02160 830 Gene3D - 252 730 IPR012341 GO:0005975
Vimu7g02160 830 PANTHER ALPHA-L-FUCOSIDASE 2 4 821 - -
Vimu7g02160 830 FunFam Alpha-L-fucosidase 2 249 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02160 Vimu-Chr7 19138744 19144630 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02160 K15923 - gmx:100777878 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02160 7 19138744 19144630 Vimu7g02160 7 19138744 19144630 ECH
Vimu7g02160 7 19138744 19144630 Vimu3g03389 3 47125773 47131774 PCT