Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03389 ATGCCAATAGCTATGAAGGTTCTTGTCCACCGACTTCTGATGTCTTTCGTCTTCTCTTGCTTACTGTGTTGGGCAATGCAAGATGGAGTACGGGCTACGGTGCGCCCCACCCCACAGAGTACATGGTGGAAGCCACTTTCAAGCAATGCAGGGGATGATGACTCTCCTCCAAGGCCCTTGAAGGTTACTTTCGCTGGGCCTGCTACTCACTGGACAGATGCCATCCCCATTGGCAATGGCCGTCTCGGTGCCATGGTTTGGGGTGGCGTACCCTCCGAACTTCTCCAGCTCAATGAGGATACACTTTGGACTGGGATCCCTGGAGACTACACCAACAAAAGTGCTCCACAAGCACTGGCTGAAGTCAGAAAGCTTGTTGATGATAGAAAATTCTCTGAAGCTACCGCAGCAGCTGTCAAGCTGTCAGGAGAGCCTTCCGATGTATACCAACTTCTCGGTGATATCAAGATAGAGTTTCATGATTCCCATCTTAAATATTCAAAGGAGTCTTATTACAGGGAGCTGGATTTGGATACTGCTACCGCTAAAGTAAAATACTCTGTGGGTGATGTAGAATTTACTAGAGAGCATTTTGTTTCTAATCCAGACCAAGTAATAGTGACAAGGTTGTCTGCAAGCAAACCTGGGTCATTATCATTTACAGTGTATTTTGATAGCAAAATGCATCATGATTCAAAGGTAAGTGGCCAAAATCAGATAATAGTTGAAGGGAGATGCCCTGGTAGTAGGATCCGACCGAGACTGAATTCAATTGACAATCCAATGGGGATTCGGTTTTCTGCAGTTTTTGATATGCAGATTAGTAACGGGGTTATACAAGTTTTAGATGATAGGAAGCTAAAAGTTGAAGGTTCAGATTCGGCTATTTTGCTTTTGACAGCTTCTTCTTCCTTTGATGGGCCATTTACTATGCCTGAAGACTCAAAGAAGGACCCTACTTCTGAGTCCCTCAGTAAAATGAAGTCTGTGAAAAGTTTTTCTTATGCTGATCTTTATGCACGACACTTAGATGACTATCAAAATCTATTTCACCGCGTCTCATTGCAACTCTCTAAAAGCTCAAAGACTGGTTTGGGAAAATCTGTTTTCTACAAAAGGCAGTCAGTTTCCTCCCAAACAAACATCTCTCAAAAGGAAGGTGACACCATTCCAACTTCAGCAAGAGTCAAATCTTTTCAAACTGACGAGGACCCTTCCTTTGTTGAGCTTTTGTTTCAATATGGTCGATATCTCCTAATCTCTTGTTCACGTCCTGGATCTCAGGTGGCAAACCTACAGGGTATCTGGAACAAAGATGTTGAGCCTGCATGGGATGGTGCTCCTCACTTGAACGTTAATCTTCAAATGAATTATTGGCCAGCCCTTTCTAGCAACCTACACGAGTGTCAAGAGCCCTTATTTGATTTCATTTCGTCTTTGTCAGCCAATGGTAAAAAAACTGCAAAGGTGAACTATGAAACAAATGGTTGGGTTGCGCATCAAGTTTCTGACATATGGGCTAAAACATCACCAGATAGAGGTGAGGCTGTTTGGGCTTTATGGCCTATGGGTGGAGCTTGGCTTTGTGTCCATTTATGGGAGCATTATACTTATACAATGGACCAAGATTTTCTTAAAAATAAAGCATACCCTTTGTTGGAAGAATGTACATCATTTTTGTTGGATTGGTTGATTGAAGGCCGTGGTGGATTATTAGAAACTAACCCATCAACTTCACCAGAGCACATGTTCACTGCACCAGACCGAAAGCCTGCTAGTGTGAGCTACTCATCAACCATGGACATTTCAATCATAAAAGAAGTTTTCTCTATAATCACTTCTGCTGCTGAGGTTTTGGGAAGACACGATGACGCAATCATCAAAAGAGTCACTACGTATCAGTCTAAGCTTCCTCCGACAAAACTTTCTAGAGATGGTTCCATTATGGAATGGGCAGAAGATTTTGAGGACCCAGATGTACATCATCGACATGTTTCACATCTGTTTGGACTATTTCCAGGGCACACGATTAGTCTTGAGCAAACTCCAGTCCTCTGTAAAGCTGTGGAATCTAGTCTAATTAAAAGAGGAGATGATGGCCCAGGATGGTCGACAACTTGGAAAGCTTCATTATGGGCACATCTTCATAATAGTGAGCATGCGTATCGTATGATAAAACACTTGATTGTCTTGGTAGACCCTGATCATGAAAGTGATTACGAAGGAGGACTTTATAGCAACCTGTTCACAACACATCCCCCTTTTCAGATTGATGCTAACTTTGGTTTTTCTGGAGCAATAGCAGAAATGCTTGTTCAGAGCACAATGAAGGACCTTTACTTGCTTCCGGCATTGCCACGCGATAAATGGGCCAATGGTTGTGTGAAAGGATTGAAAGCTCGTGGCGGGGTAACAGTCAACATTTGCTGGAAAGAAGGAGATCTAAGTGAAGTTGGGCTTTGGTCAGAAAGGCTGAGTTCCCAAGTAAGACTACATTATAGAGGAACCGTGGTCTTAACAAGTTTATCACCTGGCAGAGTTTACTCATATAATAACCTATTGAAGTGCGTGAGGACATACTCTCTCCCTCAGAAAAGTTAA 2601 0.4295 MPIAMKVLVHRLLMSFVFSCLLCWAMQDGVRATVRPTPQSTWWKPLSSNAGDDDSPPRPLKVTFAGPATHWTDAIPIGNGRLGAMVWGGVPSELLQLNEDTLWTGIPGDYTNKSAPQALAEVRKLVDDRKFSEATAAAVKLSGEPSDVYQLLGDIKIEFHDSHLKYSKESYYRELDLDTATAKVKYSVGDVEFTREHFVSNPDQVIVTRLSASKPGSLSFTVYFDSKMHHDSKVSGQNQIIVEGRCPGSRIRPRLNSIDNPMGIRFSAVFDMQISNGVIQVLDDRKLKVEGSDSAILLLTASSSFDGPFTMPEDSKKDPTSESLSKMKSVKSFSYADLYARHLDDYQNLFHRVSLQLSKSSKTGLGKSVFYKRQSVSSQTNISQKEGDTIPTSARVKSFQTDEDPSFVELLFQYGRYLLISCSRPGSQVANLQGIWNKDVEPAWDGAPHLNVNLQMNYWPALSSNLHECQEPLFDFISSLSANGKKTAKVNYETNGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLCVHLWEHYTYTMDQDFLKNKAYPLLEECTSFLLDWLIEGRGGLLETNPSTSPEHMFTAPDRKPASVSYSSTMDISIIKEVFSIITSAAEVLGRHDDAIIKRVTTYQSKLPPTKLSRDGSIMEWAEDFEDPDVHHRHVSHLFGLFPGHTISLEQTPVLCKAVESSLIKRGDDGPGWSTTWKASLWAHLHNSEHAYRMIKHLIVLVDPDHESDYEGGLYSNLFTTHPPFQIDANFGFSGAIAEMLVQSTMKDLYLLPALPRDKWANGCVKGLKARGGVTVNICWKEGDLSEVGLWSERLSSQVRLHYRGTVVLTSLSPGRVYSYNNLLKCVRTYSLPQKS 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03389 866 MobiDBLite consensus disorder prediction 37 58 - -
Vimu3g03389 866 Gene3D - 294 771 IPR012341 GO:0005975
Vimu3g03389 866 PANTHER ALPHA-L-FUCOSIDASE 2 49 860 - -
Vimu3g03389 866 Pfam Glycosyl hydrolase family 65, N-terminal domain 64 307 IPR027414 -
Vimu3g03389 866 PIRSF UCP007663 36 863 IPR016518 GO:0004560
Vimu3g03389 866 FunFam Alpha-L-fucosidase 2 292 771 - -
Vimu3g03389 866 SUPERFAMILY Six-hairpin glycosidases 317 826 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03389 Vimu-Chr3 47125773 47131774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03389 K15923 - gmx:100817294 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03389 3 47125773 47131774 Vimu3g03389 3 47125773 47131774 ECH
Vimu7g02160 7 19138744 19144630 Vimu3g03389 3 47125773 47131774 PCT