Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02036 GAGAATATGGGGAACAACATGAATGTGATCCCGATGTGCTTGTTTGTGACGACCCTGTTGTTTTCTGCTGTGTCTTGTGCACCCAATGATGGGCTGCGTAGGATTGGGCTCAAGAAGATTAAATTGGACCCTAACAACAGGCTTGCTGCTCGAATTGGGTCCAAAGATGATTCTTTCCTGGCTTCTATTAGAAAGTTTCATCTTCAAAACAACTTTGGTGTCACTGAGGAAACCGATATTGTTGGCTTAAAGAATTACTTGGATGCTCAGTATTATGGCGAAATAGCCATTGGAACATCTCCTCAGAAGTTCACTGTCATTTTCGACACAGGCAGCTCTAATTTGTGGGTACCATCATCCAAATGCATCTTTTCGCTTCCATGCTACTTCCATGCTAAGTACAGTTCTAGCATATCAAGTACTTACAGGAAAAATGGAACTGCTGCTGCTATTCAATATGGTACCGGAGCAATTTCTGGTTTCTTTAGCTATGACAATGTTAGAGTCGGTGACGTAGTTGTAAAGAACCAGGAATTTATCGAAGCAACTAGTGAGCCAGGTCTTGTATTTTTGGCAGCCAAGTTTGATGGTATACTGGGACTTGGATTTCAAGAGATATCTGTTGGAAAGGCTGTTCCAGTGTGGTACAACATGATTGAACAAGGTCTTATTAAGGAACCAGTATTTTCATTTTGGTTAAACCGCAAACCAGAGGAAGAGGAAGGAGGTGAGATTGTTTTTGGAGGTGTTGACCCTGCTCACTATAAGGGAAATCATACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGTTTGACATGGGAGATGTACTAATTGGTGGTAAACCCACTGGATATTGTGCCGGTGGGTGTGCAGCCATTGCAGACTCAGGGACTTCGCTATTGACTGGTCCAACGGCTGTAGTAACTATGATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACCGTTGTTGCAGAGTATGGACAAACGATATTGAATTTGCTTTTGGCTGAAGCACAGCCGACGAAGATCTGTTCTCAAATTGGATTGTGCACCTTTGATGGGACTCGTGGTGTTGATATGGGCATAGAGAGCGTTGTGGATGAGAATGCAAGAAAATCATCTGGTGGTCTTCATGACGCTGCTTGTTCTGCGTGTGAGATGGCGGTTGTTTGGGTGCAGAACCAGCTCAGCCAAAATCAGACACAGGATCAGATACTAAACTACGTTAATCAGCTTTGCGATAAAGTGCCAAGCCCGATGGGAGAATCTTCTGTTGGCTGCGGGGATATCTCTTCATTACCTGTAGTGTCTTTTACTATTGGTGGAAGAACTTTTGACCTTCGCCCAGAGGAGTACATACTCAAAGTGGGTGAAGGCCCTATAGCTCAGTGCATTAGTGGCTTTACTGCTATAGATATTCCACCTCCTCTTGGCCCTCTCTGGATCCTTGGGGACGTCTTCATGGGGCCTTATCATACAGTATTTGATTTTGGTAATCAAAGAGTGGGATTTGCTGATGCAGCTTAA 1548 0.4393 ENMGNNMNVIPMCLFVTTLLFSAVSCAPNDGLRRIGLKKIKLDPNNRLAARIGSKDDSFLASIRKFHLQNNFGVTEETDIVGLKNYLDAQYYGEIAIGTSPQKFTVIFDTGSSNLWVPSSKCIFSLPCYFHAKYSSSISSTYRKNGTAAAIQYGTGAISGFFSYDNVRVGDVVVKNQEFIEATSEPGLVFLAAKFDGILGLGFQEISVGKAVPVWYNMIEQGLIKEPVFSFWLNRKPEEEEGGEIVFGGVDPAHYKGNHTYVPVTRKGYWQFDMGDVLIGGKPTGYCAGGCAAIADSGTSLLTGPTAVVTMINHAIGASGVMSQECKTVVAEYGQTILNLLLAEAQPTKICSQIGLCTFDGTRGVDMGIESVVDENARKSSGGLHDAACSACEMAVVWVQNQLSQNQTQDQILNYVNQLCDKVPSPMGESSVGCGDISSLPVVSFTIGGRTFDLRPEEYILKVGEGPIAQCISGFTAIDIPPPLGPLWILGDVFMGPYHTVFDFGNQRVGFADAA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02036 515 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 24 512 IPR001461 GO:0004190|GO:0006508
Vimu7g02036 515 Pfam Saposin-like type B, region 2 324 357 IPR008138 -
Vimu7g02036 515 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 293 304 IPR001969 GO:0004190|GO:0006508
Vimu7g02036 515 Pfam Eukaryotic aspartyl protease 90 513 IPR033121 -
Vimu7g02036 515 FunFam Lysosomal aspartic protease 362 514 - -
Vimu7g02036 515 PRINTS Pepsin (A1) aspartic protease family signature 243 256 IPR001461 GO:0004190|GO:0006508
Vimu7g02036 515 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Vimu7g02036 515 PRINTS Pepsin (A1) aspartic protease family signature 293 304 IPR001461 GO:0004190|GO:0006508
Vimu7g02036 515 PRINTS Pepsin (A1) aspartic protease family signature 488 503 IPR001461 GO:0004190|GO:0006508
Vimu7g02036 515 SUPERFAMILY Acid proteases 14 514 IPR021109 -
Vimu7g02036 515 Pfam Saposin-like type B, region 1 388 424 IPR007856 GO:0006629
Vimu7g02036 515 Gene3D Acid Proteases 33 249 IPR021109 -
Vimu7g02036 515 SUPERFAMILY Saposin 322 424 IPR011001 -
Vimu7g02036 515 CDD phytepsin 81 513 IPR033869 GO:0004190
Vimu7g02036 515 ProSiteProfiles Peptidase family A1 domain profile. 91 512 IPR033121 -
Vimu7g02036 515 FunFam Aspartic proteinase A1 321 424 - -
Vimu7g02036 515 Gene3D - 321 424 - -
Vimu7g02036 515 ProSiteProfiles Saposin B type domain profile. 321 361 IPR008139 -
Vimu7g02036 515 Gene3D Acid Proteases 250 515 IPR021109 -
Vimu7g02036 515 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 106 117 IPR001969 GO:0004190|GO:0006508
Vimu7g02036 515 ProSiteProfiles Saposin B type domain profile. 385 426 IPR008139 -
Vimu7g02036 515 FunFam Lysosomal aspartic protease 77 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02036 Vimu-Chr7 18251991 18256337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02036 K08245 - gmx:100779619 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02036 7 18251991 18256337 Vimu7g02036 7 18251991 18256337 ECH
Vimu2g01118 2 7394485 7398630 Vimu7g02036 7 18251991 18256337 ECH