Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01118 ATGGTTGAACAGGTAGTCAAAATGGGAAGCATGTCAAATGTGATCGTCTTCTGTTTCTGTCTCTGGACCCTCTTGTTTTCTCTGGCGTCGTCTGCACCCAACGATGGCTTGCGCCGGATTGGACTGAAAAATATCAGATTGGACGGCGATGACGTTATGCGGTTTAAGGAATTGAGAAAGAACGTTCTTCAGAACGTTCTTCGCGGCGCTGACGGCGCCGATATTGTTGCGTTGAAGAACTACTTGGATGCTCAGTATTATGGTGAAATAGCCATTGGTACCCCTCCTCAGACGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCGTCTTCTAAATGTTACCTCTCGCTTGCATGTTACACGCATGCTAAGTACAAGTCCAGCAAATCCAGTACCTACACGGAAAATGGGACTTCTGCTGCAATTCAATACGGTAGTGGAAGTATTTCTGGTTTCTTTAGCAATGACAATGTCAGAGTTGGAGACGTAGTTGTAAATAACCAGGCATTTATTGAAGCAACTAGAGAACCTGGAGTTACATTTGTGGCAGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGAGATCTCAGTGGGAAATGCTGTTCCAGCATATTCATGTCATAGGTACAATATGGTTGAACAAGGTCTTGTAAAGGATCCAATATTTTCATTTTGGTTAAATCGTAAACCAGAAGAAGAGAATGGGGGTGAGATTGTTTTTGGTGGTGCTGATTCTGCTCACTACAGGGGCAAACATACTTATGTGCCAGTGACAAGAAAAGGATACTGGCAGTTTGACATGGGAGAGGTGCTTATTGCTGGTAAACCCACTGGGTTCTGTGCTAGTGACTGTTCTGCCATTGCGGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGACTATAATTACTGAGATAAATCAAGCAATCGGAGCATCTGGAGTTGTAAGCAAACAGTGCAAGTCTGTTGTCGAACAGTATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAGAAAAGCCTAAAAAGATCTGCTCACAAATTGGATTGTGTTCCTTTGATGGGACTCGTTCTGTTAGCATGGGCATTGAGAGTGTGTTGGATAAGGTCGAAAGAGAATCATCTGGTGGCACTCAGGGTGCTGCTTGTTCAACATGTGAGATGGCTGTTATTTGGATTCAAAACCAGCTGAGGCAGAACCAGACAGAAGAACAGATAATAGATTATGTCAATGGGCTTTGTGATAAGTTGCCCAGCCCAATGGGACAATCATCCGTTGATTGTGGACAAATCTCTTCAATGCCTATTGTTTCCTTTACTATTGGTGGAAAAGTTTTTGACCTTTCCCCAAATGAGTATATACTGAAGGTGGGAGAAGGTCCCCAAGCCCAATGCATCAGTGGCTTCATTGCTTTGGATGTGCCTCCTCCTCGTGGTCCTTTATGGATCCTTGGAGATATCTTCATGGGGCCCTATCACACCATCTTTGATTATGGTCAGCAGAGAGTCGGGTTTGCTGAAGCAGCATAA 1545 0.4408 MVEQVVKMGSMSNVIVFCFCLWTLLFSLASSAPNDGLRRIGLKNIRLDGDDVMRFKELRKNVLQNVLRGADGADIVALKNYLDAQYYGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYLSLACYTHAKYKSSKSSTYTENGTSAAIQYGSGSISGFFSNDNVRVGDVVVNNQAFIEATREPGVTFVAAKFDGILGLGFQEISVGNAVPAYSCHRYNMVEQGLVKDPIFSFWLNRKPEEENGGEIVFGGADSAHYRGKHTYVPVTRKGYWQFDMGEVLIAGKPTGFCASDCSAIADSGTSLLAGPTTIITEINQAIGASGVVSKQCKSVVEQYGQTILELLLAEEKPKKICSQIGLCSFDGTRSVSMGIESVLDKVERESSGGTQGAACSTCEMAVIWIQNQLRQNQTEEQIIDYVNGLCDKLPSPMGQSSVDCGQISSMPIVSFTIGGKVFDLSPNEYILKVGEGPQAQCISGFIALDVPPPRGPLWILGDIFMGPYHTIFDYGQQRVGFAEAA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01118 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Vimu2g01118 514 FunFam Aspartic proteinase A1 320 423 - -
Vimu2g01118 514 SUPERFAMILY Acid proteases 43 513 IPR021109 -
Vimu2g01118 514 SMART sapb_4 284 356 IPR008139 -
Vimu2g01118 514 SMART sapb_4 386 470 IPR008139 -
Vimu2g01118 514 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Vimu2g01118 514 PRINTS Pepsin (A1) aspartic protease family signature 242 255 IPR001461 GO:0004190|GO:0006508
Vimu2g01118 514 PRINTS Pepsin (A1) aspartic protease family signature 292 303 IPR001461 GO:0004190|GO:0006508
Vimu2g01118 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Vimu2g01118 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Vimu2g01118 514 ProSiteProfiles Saposin B type domain profile. 320 360 IPR008139 -
Vimu2g01118 514 FunFam Vacuolar aspartic proteinase 384 513 - -
Vimu2g01118 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 72 512 IPR001461 GO:0004190|GO:0006508
Vimu2g01118 514 FunFam Lysosomal aspartic protease 72 318 - -
Vimu2g01118 514 Pfam Eukaryotic aspartyl protease 85 513 IPR033121 -
Vimu2g01118 514 Gene3D - 320 423 - -
Vimu2g01118 514 CDD phytepsin 76 512 IPR033869 GO:0004190
Vimu2g01118 514 Pfam Saposin-like type B, region 2 323 356 IPR008138 -
Vimu2g01118 514 SUPERFAMILY Saposin 321 423 IPR011001 -
Vimu2g01118 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 292 303 IPR001969 GO:0004190|GO:0006508
Vimu2g01118 514 Gene3D Acid Proteases 250 514 IPR021109 -
Vimu2g01118 514 Gene3D Acid Proteases 39 248 IPR021109 -
Vimu2g01118 514 ProSiteProfiles Peptidase family A1 domain profile. 86 511 IPR033121 -
Vimu2g01118 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01118 Vimu-Chr2 7394485 7398630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01118 K08245 - gmx:100801598 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01118 2 7394485 7398630 Vimu2g01118 2 7394485 7398630 ECH
Vimu2g01118 2 7394485 7398630 Vimu7g02036 7 18251991 18256337 ECH