Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02016 ATGAAAGCAGTCTCCGATTGGATCGATTCTTGTTCCAAAGAGCAATTGACGACGTATCAAGAATGGTTCATCTTAGCCGATTCAGGTTTTACTGCTTCGCTTCCTTTCATTCTTCAACTCCAGTCGCATTCGGATGCAACTCATTCTTTTTCTCTTTTCTTCTCTAATTTGATCGTAGACGGAGATGGCCGTATCTCTGGAAATGATGCAACCAAGTTCTTTGCTCTCTCCAACTTGTCTCGCTCCCAACTCAAGCAGGTTTGGGCTATCGCTGATGCTAAAAGACAAGGATTTCTAGGTTTTCAAGAGTTTGTCATCGCAATGCAGCTCGTTGCGCTGGCACAAGCAGGATACGATATCAACTCTGATATCCTTAAAGCGGAAATTGACAAGGAAAATATTAAATCTCCAGTAATGAAAGGGCTTGATGGTTTAATAGATCAGACAAAGAGTTTGACATTACATTCCCAACCAGAGGCATTTGGGACTGCTCAGCCTCAGCCTTTGCCCCGCAATTCATGGGCTGCTCCAAAATCTGTGAAGAAATTACCTCTCAATGCAGTTACATCAATAATTGATGGTTTGAAGAGATTGTATGTGGAAAAGCTAAAGCCGTTGGAAGTCACTTATCAATTCAATGATTTTGTATCTCCATTATTGACCGACAGTGATTTTGATGCTAAACCAATGGTTATGCTTCTTGGTCAATATTCCACAGGGAAAACAACCTTCATAAAACATATGCTAAGATGCAATTATCCAGGTGCACACATTGGACCAGAGCCTACAACGGACAGATTTGTGGTTGTCATGTCTGGTTCCGATGAAAGGAGTATTCCTGGAAATACAGTAGCTGTTGATGCTGGTATGCCTTTTAGTGGCCTGACAACTTTTGGTGGTTCATTTTTGTCAAAGTTCCAGTGTTCTCAACTGCCACATCCACTGCTAGATGAAATAACATTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAACAAAGGACTCAACGAAGTTATGACTTCACAGGTGTTATATCTTGGTTTGCTGCAAAATGTGATTTGATACTTCTGCTATTCGATCCTCATAAACTTGACATTAGTGATGAATTTAAACGTGTAATTGGGTCTCTACACGGTCATGATGACAAGATTCGTGTGGTTTTGAATAAAGCTGACCAAATTGATACTCAACAACTCATGAGAGTTTATGGAGCATTGATGTGGTCTCTGGGGAAAGTTCTGAATACTCCAGAAGTTATGCGTGTATATATTGGGTCATTTAATGATAAGCCTATAAACGAAGGATTTGTTGGCCCGTTAGGACAGGAGCTCTTTGAAAAGGAACAGAATGATCTTCTTGCAGACTTGGTAGATATTCCAAGAAAGGCATGCGACAGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGTATCTAATTAGTCATCTTAGGAATGAGATGCCAGCAATGATGGGCAAAGCTAAGGCTCAACAAAGGCTTATAGAGAATCTTGAAGACGAATTTAAAAAGGTTCAAAGGCAGTTTCATCTACCAGCTGGTGATTTTCCCGATGTAGAACACTTCAGAGAGATTTTGAGTAGCTATAGCATAGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCGGTTGATGATATGCTTGGATACGAAATACCAGAGTTATTAAAAAAGTTCAGAAATCCTTATGATTGA 1731 0.4009 MKAVSDWIDSCSKEQLTTYQEWFILADSGFTASLPFILQLQSHSDATHSFSLFFSNLIVDGDGRISGNDATKFFALSNLSRSQLKQVWAIADAKRQGFLGFQEFVIAMQLVALAQAGYDINSDILKAEIDKENIKSPVMKGLDGLIDQTKSLTLHSQPEAFGTAQPQPLPRNSWAAPKSVKKLPLNAVTSIIDGLKRLYVEKLKPLEVTYQFNDFVSPLLTDSDFDAKPMVMLLGQYSTGKTTFIKHMLRCNYPGAHIGPEPTTDRFVVVMSGSDERSIPGNTVAVDAGMPFSGLTTFGGSFLSKFQCSQLPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIGSLHGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPINEGFVGPLGQELFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAYLISHLRNEMPAMMGKAKAQQRLIENLEDEFKKVQRQFHLPAGDFPDVEHFREILSSYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02016 576 Pfam N-terminal EH-domain containing protein 194 226 IPR031692 -
Vimu7g02016 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 498 IPR027417 -
Vimu7g02016 576 Coils Coil 499 519 - -
Vimu7g02016 576 CDD EH 50 116 IPR000261 GO:0005515
Vimu7g02016 576 Pfam Domain of unknown function (DUF5600) 467 567 IPR040990 -
Vimu7g02016 576 Gene3D - 231 459 IPR027417 -
Vimu7g02016 576 PANTHER EH DOMAIN 50 573 - -
Vimu7g02016 576 Pfam Cytoskeletal-regulatory complex EF hand 60 111 IPR000261 GO:0005515
Vimu7g02016 576 Pfam Dynamin family 231 390 IPR045063 -
Vimu7g02016 576 Gene3D - 40 136 - -
Vimu7g02016 576 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vimu7g02016 576 FunFam EH domain-containing protein 1 231 459 - -
Vimu7g02016 576 ProSiteProfiles EH domain profile. 46 117 IPR000261 GO:0005515
Vimu7g02016 576 SUPERFAMILY EF-hand 50 120 IPR011992 -
Vimu7g02016 576 CDD EHD 230 474 - -
Vimu7g02016 576 SMART eh_3 37 134 IPR000261 GO:0005515
Vimu7g02016 576 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 225 460 IPR030381 GO:0005525
Vimu7g02016 576 Gene3D - 195 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02016 Vimu-Chr7 18094175 18099077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02016 8 576 EF-hand Containing Proteins AT4G05520 71.178 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02016 K12483 - gmx:100803757 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02016 7 18094175 18099077 Vimu2g01162 2 7721175 7725648 PCT