Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01162 ATGAAGACCGGGTCCGGTCCCAAAGAGTACCAGGAATGGTTCAATTTGGCTGATTCAGACGGAGATGGACGAATATCTGGAAATGAGGCCACTAAGTTCTTCGCTCTCTCCAACTTGTCACGTTCGCAACTCAAACAGCTTTGGGCTCTAGCCGATGTCAAACGACAGGGGTTTTTAGGTTTTCCGGAGTTTGTTACTGCAATGCAGTTGGTTTCGCTGGCGCAAGCGGGGCAAGAACTTAACTCGGATATTCTCAAAACTCAAGTTGATAAGGAAAATATTAAACCTCCTATATTGGAAGGACTCGATGCTTTAGTAGCACAAAAGAGTTTAATAACTACTACCCCACCCGAAGTAAATGGGATTTCTCAGCCACAAGGATTTCCAACTAATAGGTGGTTTGGTTCGAAATCTTCAAAGAAAACCAACACTGATTTTGATGCTAAACCCATGGTCATGCTTCTGGGTCAATATTCAACAGGAAAAACTACGTTTATAAAACATTTGTTAAGATGTGATTATCCAGGGGCACATGTTGGACCAGAGCCTACCACTGATAGATTTGTTGTTGTCATGTCTGGACCCGATGAGAGGAGTATTCCTGGGAATACCATCGCTGTTGATGCTGACATGCCTTTCAGCGGCTTGACAACATTTGGAGGTTCTTTTTTATCAAAGTTCCAATGTTCTCAAATGCCACATCCTCTGTTAGATGAAATAACACTTGTGGACACTCCTGGAGTCTTGTCTGGAGAGAAACAGAGGACTCAACGAAGCTATGATTTCACTGGTGTCGTGTCTTGGTTTGCTGCAAAATGTGATCTCATTCTTCTCCTGTTTGATCCTCACAAACTAGACATCAGTGATGAGTTCAAACGCGTAATCACATCTTTACGTGGTAATGATGACAAGATACGAGTGGTTTTGAATAAGGCAGATCAAGTTGATACTCAACAACTTATGAGAGTGTATGGAGCATTGATGTGGTCATTGGGGAAAGTTCTAAATACTCCCGAAGTTTCACGTGTATACATTGGCTCATTTAACGATAAGCCTATGGATGAAGACTTCGTGAGTCCATTAGTGCAGGATCTGTTTGAGAAGGAACAAAATGATCTGCTTGCAGATTTGATAGATATTCCAAAGAAGGCATGCGATCGCCGGATCAACGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCGCATATAATTAGCCACCTTAAGAAGGAGATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAGAGACTTATTGACAATCTTGAGGAAGAATTTGCAAAGGTCCAAAGAGAGTTTCATCTACCTCCTGGTGATTTCCCCAGTGTTGAACACTTCAGAGAAGTTTTGAGTGGTTATAGCATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCCGTGGATGACATGCTTGGATATGAGATACCAGAGCTTTTAAAGAAATTCAGAAATCCTTATGATTAA 1494 0.4163 MKTGSGPKEYQEWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQLWALADVKRQGFLGFPEFVTAMQLVSLAQAGQELNSDILKTQVDKENIKPPILEGLDALVAQKSLITTTPPEVNGISQPQGFPTNRWFGSKSSKKTNTDFDAKPMVMLLGQYSTGKTTFIKHLLRCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFSGLTTFGGSFLSKFQCSQMPHPLLDEITLVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVITSLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPMDEDFVSPLVQDLFEKEQNDLLADLIDIPKKACDRRINEFVKRARSAKIHAHIISHLKKEMPAIMGKAKAQQRLIDNLEEEFAKVQREFHLPPGDFPSVEHFREVLSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01162 497 CDD EH 10 76 IPR000261 GO:0005515
Vimu2g01162 497 CDD EHD 151 395 - -
Vimu2g01162 497 SMART efh_1 9 37 IPR002048 GO:0005509
Vimu2g01162 497 SMART efh_1 43 71 IPR002048 GO:0005509
Vimu2g01162 497 Pfam Dynamin family 152 311 IPR045063 -
Vimu2g01162 497 SMART eh_3 7 90 IPR000261 GO:0005515
Vimu2g01162 497 SUPERFAMILY EF-hand 8 77 IPR011992 -
Vimu2g01162 497 Gene3D - 4 99 - -
Vimu2g01162 497 Gene3D - 152 380 IPR027417 -
Vimu2g01162 497 FunFam EH domain-containing protein 1 152 380 - -
Vimu2g01162 497 Gene3D - 139 488 - -
Vimu2g01162 497 ProSiteProfiles EF-hand calcium-binding domain profile. 42 74 IPR002048 GO:0005509
Vimu2g01162 497 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Vimu2g01162 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 419 IPR027417 -
Vimu2g01162 497 ProSiteProfiles EH domain profile. 6 84 IPR000261 GO:0005515
Vimu2g01162 497 Pfam Cytoskeletal-regulatory complex EF hand 9 71 IPR000261 GO:0005515
Vimu2g01162 497 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 146 382 IPR030381 GO:0005525
Vimu2g01162 497 Pfam Domain of unknown function (DUF5600) 387 488 IPR040990 -
Vimu2g01162 497 PANTHER EH DOMAIN 10 494 - -
Vimu2g01162 497 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01162 Vimu-Chr2 7721175 7725648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01162 8 497 EF-hand Containing Proteins AT4G05520 73.245 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01162 K12483 - gmx:100809091 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01162 2 7721175 7725648 Vimu2g01162 2 7721175 7725648 ECH
Vimu7g02016 7 18094175 18099077 Vimu2g01162 2 7721175 7725648 PCT