Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01963 ATGGTGCAGTGCCTAGACGGATTAAAGCATTTGTGTGCCACTCTGGTAAATTGTTGTGATGCAGATTCGTCAAAGCAACCTAGAGGTTTAGAAAATCCAGAAGTTCTTGCAAGAGAGACAGTGTTTAGTGTAAGTGAGATTGAAGCGCTGTATGAACTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGATGGCCTGATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGACGAATAAGAAAGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAATGGCATACTTGATTTTGAAGAGTTTGCACGGGCTCTCTCTGTCTTTCATCCCAATGCACCAATTGATGATAAGATTGAGTGTAAGAATGATAAATCATTAGAAGACTTCTGCTATCTGGTAAAACAAATGGTAGTGGCCACTCTGGCTGAATCTGGCATGAATCTTTCAGATGATGTGGTCGAAAGTATTATTGACAAGACATTTGAGGAAGCTGATACCAAACATGATGGGAAGATTGACAAGGAAGAGTGGCGAAACCTTGTGTTGCGGCATCCATCTCTTCTGAAAAATATGACACTTCAGTATCTCAAGTGA 612 0.4003 MVQCLDGLKHLCATLVNCCDADSSKQPRGLENPEVLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDDKIECKNDKSLEDFCYLVKQMVVATLAESGMNLSDDVVESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01963 203 Gene3D - 32 203 - -
Vimu7g01963 203 SMART efh_1 86 114 IPR002048 GO:0005509
Vimu7g01963 203 SMART efh_1 162 190 IPR002048 GO:0005509
Vimu7g01963 203 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Vimu7g01963 203 FunFam calcineurin B-like protein 3 32 203 - -
Vimu7g01963 203 CDD EFh 87 187 IPR002048 GO:0005509
Vimu7g01963 203 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Vimu7g01963 203 PANTHER CALCINEURIN B 17 203 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu7g01963 203 Pfam EF-hand domain pair 64 109 IPR002048 GO:0005509
Vimu7g01963 203 Pfam EF hand 163 187 IPR002048 GO:0005509
Vimu7g01963 203 SUPERFAMILY EF-hand 33 200 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01963 Vimu-Chr7 17721975 17725691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01963 1 203 EF-hand Containing Proteins AT5G55990 80.288 4.51e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01963 K06268 - gmx:100791045 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01963 7 17721975 17725691 Vimu2g01258 2 8406205 8407661 PCT