Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01258 ATCATGGTTCAGTGCTTTGATGGATTAAAGCAGTTGTATACTGCTGTGATAAGCTTTTGTGATGCTGGTTTGTCCCAGCAGCAGCCAAGAGGTTTAGGAAATCCAGAAGCACTTGCAAGAGAAACAGTGTTTAGTGTAAGTGAGATTGAAGCACTGTATGAACTATTCAAGAAGATCAGCAGTGCAGTAATTGATGATGGACTAATTACTAAGGATGAATTTCAGTTGGCCTTGTTCAAGACAACCAAGAAAGAGAGCTTATTTGCGGATAGGGTGTTTGACTTGTTTGACACAAAGCATCAGGGGATACTTGATTTCAAAGAGTTTGCACTTGCTCTTTCTATTTTTCATCCCAATGCACCAATCAATGACAAGATTGAGTGTAAGCAACTAATATTTCTTAAGACTCTAGATATCTTCTAG 423 0.3853 IMVQCFDGLKQLYTAVISFCDAGLSQQQPRGLGNPEALARETVFSVSEIEALYELFKKISSAVIDDGLITKDEFQLALFKTTKKESLFADRVFDLFDTKHQGILDFKEFALALSIFHPNAPINDKIECKQLIFLKTLDIF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01258 140 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Vimu2g01258 140 Gene3D - 34 137 - -
Vimu2g01258 140 PANTHER CALCINEURIN B 26 128 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu2g01258 140 SUPERFAMILY EF-hand 35 127 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01258 Vimu-Chr2 8406205 8407661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01258 2 127 EF-hand Containing Proteins AT5G55990 76.190 8.63e-62 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01258 K06268 - pvy:116105058 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01258 2 8406205 8407661 Vimu2g01258 2 8406205 8407661 ECH
Vimu7g01963 7 17721975 17725691 Vimu2g01258 2 8406205 8407661 PCT