Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01828 ATGTCGATGAGTGAGCGCAAGACTATCGACCTCGAACAGGGATGGGATTTCATGCAGAAGGGCATCACCAAACTCAAGAACATCCTGGAAGGCCTGCCCGAGACTCAATTCAGCTCTGAGGACTACATGATGCTTTATACGACCATTTACAATATGTGTACTCAGAAGCCTCCTCATGACTACTCCCAACAACTTTATGACAAGTATAGGGAGTCTTTTGAAGAGTACATTGTATCGACGGCAGTCAAAACACAGATCGCTTATCGTAGTCAGACAATGAAGCAGCATTTGCTGAGGTTATCCTGCTCAGAAAAGACTCCTTTGGTGGTATTGCCTTCTTTGAGAGAGAAGCATGACGAATTTATGTTGAGAGAACTTGTGAAGAGATGGGCAAACCATAAAATCATGGTTCGATGGCTTTCTCGGTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGATCACTTCCGCCCCTTAATGAAGTTGGACTCACTTGCTTCCGTGATTTGGTTTACAAGGAAGTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTATTGATCAAGAACGTGAAGGAGAACAGATTGATAGAGCTCTATTAAAGAATGTACTAGACATATTTGTTGAAATTGGAATGGGACAAATGGATCACTATGAGAATGATTTTGAAACTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATCCTTGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCACATTACTTGCACTCTAGTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTTTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGAATGTTCAGGCTATTCTCTAAAATACCTCGAGGCTTGGATCCTGTTTCCAGTATATTTAAGCTGCATGTTACCACTGAAGGTATGGCATTGGTGAAGCAGGCTGAAGATGCAGCTAGCAACAAAAAGGCAGAAAAAAAGGATATTGTCGGTCTGCAAGAGCAGGTTTTTGTTCGGAAAGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAATGATTGTTTCCAGAATCACACTCTTTTTCACAAGGTTTTGAATAGAAGTGCCTTTAATTATGTTGGATTGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGTGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGACGAAGCAATTGAAGAGACTCTAGAAAAGGTCGTGAAGCTGCTTGCATATATCAGTGACAAAGACTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTCGAAGACTTCTGTTTGACAAGAGTGCCAATGATGATCACGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACGGATTTGACATTGGCAAAGGAGAATCAAACGAGTTTTGAGGAGTATTTAAGCAATAATCCCAATGCAGACCCTGGTATAGACTTGACAGTTACGTTACAAATCTTTCGATCTCAATCTTCCTGCAGAAATGGTAATCTGGATCTTCTTGATATGAAGCATCTGATTAGGTGTGTTGAAGTTTTCAAAGAATTTTATCAAACTAAAACAAAGCACAGAAAACTTACATGGATATATTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGAGCCAAAAACCGTGGAGCTGATTGTTACAACCTACCAGGCTTCAGCATTGCTGCTTTTTAACTTGTCAGATAGACTGAGTTACTCAGAGATAATGACTCAATTAAACTTATCGGACGATGATGTTATTAGACTGCTTCATTCCTTGTCGTGTGCCAAGTACAAGATTCTCATCAAGGAGCCAAATACAAAAACAATATCATCCACTGATTATTTTGAATTTAATTCTAAATTTACTGACAAAATGAGAAGAATCAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAGAAAGTAATTGAGGATGTTGATAAGGACAGAAGATATGCTATCGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTCTTGGGCTACCAACAATTAGTCGTGGAGTGTGTTGAACAGTTGGGTCGCATGTTTAAGCCTGACGTCAAGGCTATTAAAAAGCGGATAGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCTAACATGTTCAAGTACTTGGCTTGA 2364 0.3968 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPETQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIVSTAVKTQIAYRSQTMKQHLLRLSCSEKTPLVVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKEVNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFETAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKLHVTTEGMALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKVLNRSAFNYVGLALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTLQIFRSQSSCRNGNLDLLDMKHLIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNLSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILIKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVVECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01828 787 Gene3D Cullin Repeats 3 170 - -
Vimu7g01828 787 SUPERFAMILY Cullin repeat-like 11 425 IPR016159 -
Vimu7g01828 787 Coils Coil 351 371 - -
Vimu7g01828 787 FunFam Cullin-1, putative 171 292 - -
Vimu7g01828 787 FunFam Cullin-1, putative 296 430 - -
Vimu7g01828 787 Gene3D - 703 787 IPR036388 -
Vimu7g01828 787 Gene3D Cullin; Chain C, Domain 2 568 702 - -
Vimu7g01828 787 PANTHER CULLIN 9 783 IPR045093 -
Vimu7g01828 787 SMART cul_2 461 612 IPR016158 -
Vimu7g01828 787 ProSiteProfiles Cullin family profile. 430 662 IPR016158 -
Vimu7g01828 787 SMART Cullin_Nedd8_2 714 781 IPR019559 -
Vimu7g01828 787 Pfam Cullin protein neddylation domain 717 779 IPR019559 -
Vimu7g01828 787 Gene3D Cullin Repeats 431 544 - -
Vimu7g01828 787 FunFam Cullin-1 like 431 544 - -
Vimu7g01828 787 Pfam Cullin family 24 690 IPR001373 GO:0006511|GO:0031625
Vimu7g01828 787 Gene3D Cullin Repeats 296 430 - -
Vimu7g01828 787 FunFam Cullin-1 704 787 - -
Vimu7g01828 787 Gene3D Cullin Repeats 171 293 - -
Vimu7g01828 787 SUPERFAMILY "Winged helix" DNA-binding domain 702 787 IPR036390 -
Vimu7g01828 787 SUPERFAMILY Cullin homology domain 429 700 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01828 Vimu-Chr7 16636788 16643465 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01828 K03347 - gmx:100786561 1386.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01828 7 16636788 16643465 Vimu10g00221 10 1325970 1335898 PCT