Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00221 ATGTCCATGAGTGAGCGCAAGACCATTGACCTGGACCAAGGATGGGATTTTATGCAGAAGGGCATTATGAAGCTGAAGAACATTCTGGAAGGGCTGCCTGAGCCCCAGTTCAGCTCGGAGGACTATATGATGCTATACACGACCATATACAATATGTGCACTCAGAAGCCACCTCATGACTATTCCCAACAACTGTATGACAAGTATAGGGAGTCGTTTGAAGAGTACATCGTATCAACGGTATTACCTTCTTTGAGAGAAAAGCATGATGAATTCATGTTAAGAGAACTTGTAAAAAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTACTTGGATCGCTACTTTATTGCTCGGAGGTCACTTCCACCTCTTCATGAAGTGGGGTTGACATGCTTCCGTGATTTGATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTGTTGAAAAATGTATTAGATATATTTGTTGAAATTGGTATGGGGCAAATGGATCATTATGAGATTGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGGAAGGCTTCAAACTGGATTCTTGAAGATTCTTGTCCTGATTATATGCTAAAGGCCGAGGAGTGCTTAAAACGTGAGAAAGATAGGGTTGCCCATTATTTGCATTCTAGCAGTGAACCAAAGTTATTAGAGAAAGTTCAACATGAACTGTTATCTGTATATGCGAACCAACTCCTTGAAAAGGAGCATTCTGGATGTCATGCCTTACTTCGAGATGACAAGGTTGAAGATTTGTCAAGGATGTTCAGGCTCTTTTCTAAGATTCCCCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACGGCTGAAGGCATGGCCTTAGTGAAGTTGGCTGAAGATGCAGTGAGTACCAAAAAGGCGGAGAAAAAGGATATTGTTGGCTTACAAGAGCAGGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACTTGGCATATGTGAATGATTGTTTCCAAAATCATACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCTAGTGCGGAACTGCTTGCAACTTTTTGTGACAATATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTTGTCAAGTTGCTTGCCTATATCAGTGACAAAGATTTGTTTGCTGAATTTTATAGGAAGAAACTAGCTCGAAGGCTCCTGTTTGACAAGAGTGCCAATGATGACCATGAGAGAAGCATTTTAACAAAGCTGAAGCAACAATGTGGTGGTCAATTTACCTCGAAGATGGAAGGAATGGTTACAGATTTGACACTTGCAAAGGAGAACCAAACAAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCCGACCCTGGAATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGACCTCAATCTTCCAGCAGAAATGGTCAGATGCGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACCAAGCACAGAAAACTTACATGGATTTATTCCTTGGGGACCTGCAACATAAATGGGAAGTTTGATCCAAAAACTGTAGAGCTGATTGTAACAACTTACCAGGCTTCGGCATTGCTTCTATTTAATTCCTCAGACAGACTGAGTTATTCAGAGATAATGACTCAGTTAAATTTATCTGATGATGATGTTATTAGACTGCTCCACTCCTTGTCATGTGCCAAATACAAAATTCTTAACAAGGAACCAAACACAAAAACAATATCTTCTACAGATTATTTTGAATTTAATTCAAAATTTACAGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCCGTTGATGAGAAGAAAAAAGTTATTGAGGATGTTGACAAAGACAGAAGATATGCTATCGATGCCTCTATTGTGCGTATCATGAAGAGTCGGAAAGTTTTAAATTACCAACAGTTAGTTATGGAGTGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGACAAAGATAACGCAAATCTGTTCAGGTATTTGGCATGA 2187 0.3964 MSMSERKTIDLDQGWDFMQKGIMKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLHEVGLTCFRDLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYEIDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGMALVKLAEDAVSTKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNINGKFDPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLNYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFRYLA 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00221 728 Gene3D Cullin Repeats 139 246 - -
Vimu10g00221 728 SMART cul_2 404 553 IPR016158 -
Vimu10g00221 728 Gene3D Cullin; Chain C, Domain 2 491 644 - -
Vimu10g00221 728 ProSiteProfiles Cullin family profile. 373 603 IPR016158 -
Vimu10g00221 728 PANTHER CULLIN 10 723 IPR045093 -
Vimu10g00221 728 FunFam Cullin-1 like 491 644 - -
Vimu10g00221 728 SUPERFAMILY Cullin homology domain 372 641 IPR036317 -
Vimu10g00221 728 SMART Cullin_Nedd8_2 655 722 IPR019559 -
Vimu10g00221 728 FunFam Cullin-1 like 374 487 - -
Vimu10g00221 728 Gene3D - 645 728 IPR036388 -
Vimu10g00221 728 FunFam Cullin-1, putative 251 373 - -
Vimu10g00221 728 Gene3D Cullin Repeats 251 373 - -
Vimu10g00221 728 Gene3D Cullin Repeats 3 138 - -
Vimu10g00221 728 Pfam Cullin family 26 631 IPR001373 GO:0006511|GO:0031625
Vimu10g00221 728 SUPERFAMILY Cullin repeat-like 11 368 IPR016159 -
Vimu10g00221 728 SUPERFAMILY "Winged helix" DNA-binding domain 643 728 IPR036390 -
Vimu10g00221 728 FunFam Cullin-1, putative 5 138 - -
Vimu10g00221 728 FunFam Cullin-1, putative 139 247 - -
Vimu10g00221 728 FunFam Cullin-1 645 728 - -
Vimu10g00221 728 Pfam Cullin protein neddylation domain 658 720 IPR019559 -
Vimu10g00221 728 Gene3D Cullin Repeats 374 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00221 Vimu-Chr10 1325970 1335898 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00221 K03347 - gmx:100784626 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00221 10 1325970 1335898 Vimu10g00221 10 1325970 1335898 ECH
Vimu7g01828 7 16636788 16643465 Vimu10g00221 10 1325970 1335898 PCT