Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01821 CTCTTCATCTCTCTCTCTCTCTCTCTAGTCTCCAATGTCGGCTCTCTTCTCCATCTCCCCGAGGTTGTGGCCCTAAAACGGAGGAGACTATCTGCGGCAATGGAGGAACCGAGTAAACTGAAGCGTGCCCTGATTGATTCCTCGGCCGGAGCAATTTCCGGAGGAATATCACGGACTGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAACTGGAGCCCACATCTTCGTGGACTTTACTACGTAAGGATTTGGCTGCAGCTGCTTCTGCACCATCAAAATATACTGGCATGTTTCAAGCAACCAAGGATATTCTTAGAGAAGAAGGCGTTCAGGGATTTTGGCGGGGAAATGTCCCGGCATTGCTCATGGTTATGCCGTATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGTCTCTGGCTCTTCGAAGACAGAGAATCACATTAATTTGAGCCCTTATCTTTCCTATGTCAGTGGAGCATTAGCTGGGTGTGCAGCTACAGTAGGTTCATACCCCTTTGATCTTCTCCGTACCATATTAGCATCTCAGGGTGAACCAAAGGTATATCCAACCATGAGATCAGCATTCATTGATATTGTTCGTACACGTGGATTCCAAGGCTTGTATTCCGGACTGTCCCCTACTCTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACGTATGATACATTTAAGCGTTGGGCCATGGCTTTGAATCATAGATTTTCGAACGCTGCTGCAGAAGACAACATCTCTAGCTTTCAGCTTTTCCTTTGTGGGTTAGCAGCTGGAACATGTGCCAAACTTGTCTGTCATCCACTTGATGTCGTCAAGAAAAGATTTCAGATAGAAGGGCTTCAAAGACATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAACATGTTCGATGCCATGCAACGGATAATGCGATTAGAGGGTTGGGCTGGTTTGTACAAGGGGATAATCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTTACATTTGTTGCTTATGAGTTGACATCAGATTGGCTAGAGTCCAGTTTTAGTTGA 1095 0.4557 LFISLSLSLVSNVGSLLHLPEVVALKRRRLSAAMEEPSKLKRALIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWTLLRKDLAAAASAPSKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFVSGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPTMRSAFIDIVRTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMALNHRFSNAAAEDNISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMQRIMRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESSFS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01821 364 PANTHER SOLUTE CARRIER FAMILY 25 44 359 - -
Vimu7g01821 364 SUPERFAMILY Mitochondrial carrier 41 353 IPR023395 -
Vimu7g01821 364 Pfam Mitochondrial carrier protein 159 246 IPR018108 -
Vimu7g01821 364 Pfam Mitochondrial carrier protein 261 360 IPR018108 -
Vimu7g01821 364 Pfam Mitochondrial carrier protein 47 147 IPR018108 -
Vimu7g01821 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 261 358 IPR018108 -
Vimu7g01821 364 FunFam Mitochondrial thiamine pyrophosphate carrier 1 37 361 - -
Vimu7g01821 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 41 145 IPR018108 -
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 120 140 IPR002067 GO:0055085
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 46 59 IPR002067 GO:0055085
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 270 292 IPR002067 GO:0055085
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 59 73 IPR002067 GO:0055085
Vimu7g01821 364 PRINTS Mitochondrial carrier protein signature 217 235 IPR002067 GO:0055085
Vimu7g01821 364 Gene3D Mitochondrial carrier domain 38 362 IPR023395 -
Vimu7g01821 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 158 244 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01821 Vimu-Chr7 16576285 16580122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01821 34 364 Organic Solute Cotransporters AT3G21390 72.619 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01821 K15108 - gmx:100784986 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01821 7 16576285 16580122 Vimu10g00209 10 1269237 1273265 PCT