Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00209 ATGGAGGGGGAACCGAGCCAGCTGAAACGGGCTGCGATTGATGCCACCGCCGGAGCTCTTTCCGGGGCTGTATCCAGGACCGTCACGTCGCCTCTTGATGTTATTAAGATTAGGTTTCAGGTTCAACTAGAACCCACATCTTCATGGGCTTTACTACGCAAGGATTTGTCTACTCCTTCAAAATATACCAGCATGGTTCAAGCAAGCAGAGATATTTTCAGAGAAGAAGGCATACGGGGTTTTTGGCGGGGAAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAAGTATACAATTTACTGTTCTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAAACAGGTCAAAGCCTTGTCAATCTGCAATCTAGAGTTATTAATTACTTGGGCATTTCCTGTTGTAGGTCTATTATGTTCATTGCTTTGCTTTCTGTTGCTGCAGAGAATCACATGAATCTGAGCCCTTATCTATCCTATATGAGTGGGGCAATAGCTGGGAGTGCTGCTACTGTAGGTTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCCCAGGGTGAACCCAAGGTTTATCCAAACATGAGAACGGCATTTGTTGATATTGTGCAGACTCGTGGTTTCCAAGGCTTGTATGCTGGATTGTCACCAACCCTAGTTGAGATTATACCATATGCAGCTCTACAATTTGGCACCTATGATACATTTAAACGTTGGACCATGGCGTGGAATCAACGTCAATATTCGAATCCTACTGCAGAAAACATCTCTAGCTTTCAGCTTTTCCTCTGTGGAGTGAGTGCAGGAATATGTGCCAAGCTCGCCACTCATCCACTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACACCGTGCATACAACAATATGCTTGATGCCATAAAGCGAATATTACAAATGGAGGGTTGGGCTGGTTTATATAAGGGGATAGTCCCATCAACTGTTAAAGCTGCACCAGCTAATGCTGTAACATTTGTGGCGTATGAATTGACATCAGACTGGCTGGAATCTCTTTTGACTTGA 1086 0.4401 MEGEPSQLKRAAIDATAGALSGAVSRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSTPSKYTSMVQASRDIFREEGIRGFWRGNVPALLMVMPYTSIQFTVLHKLKTFASGSSKTGQSLVNLQSRVINYLGISCCRSIMFIALLSVAAENHMNLSPYLSYMSGAIAGSAATVGSYPFDLLRTILASQGEPKVYPNMRTAFVDIVQTRGFQGLYAGLSPTLVEIIPYAALQFGTYDTFKRWTMAWNQRQYSNPTAENISSFQLFLCGVSAGICAKLATHPLDVVKKRFQIEGLQRHPRYGARVEHRAYNNMLDAIKRILQMEGWAGLYKGIVPSTVKAAPANAVTFVAYELTSDWLESLLT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00209 361 PANTHER SOLUTE CARRIER FAMILY 25 15 356 - -
Vimu10g00209 361 Gene3D Mitochondrial carrier domain 2 126 IPR023395 -
Vimu10g00209 361 Gene3D Mitochondrial carrier domain 127 359 IPR023395 -
Vimu10g00209 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 155 241 IPR018108 -
Vimu10g00209 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 258 355 IPR018108 -
Vimu10g00209 361 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Vimu10g00209 361 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Vimu10g00209 361 PRINTS Mitochondrial carrier protein signature 267 289 IPR002067 GO:0055085
Vimu10g00209 361 PRINTS Mitochondrial carrier protein signature 214 232 IPR002067 GO:0055085
Vimu10g00209 361 Pfam Mitochondrial carrier protein 258 356 IPR018108 -
Vimu10g00209 361 Pfam Mitochondrial carrier protein 156 242 IPR018108 -
Vimu10g00209 361 Pfam Mitochondrial carrier protein 14 110 IPR018108 -
Vimu10g00209 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Vimu10g00209 361 SUPERFAMILY Mitochondrial carrier 9 350 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00209 Vimu-Chr10 1269237 1273265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00209 4 361 Organic Solute Cotransporters AT3G21390 65.840 6.30e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00209 K15108 - gmx:100803750 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00209 10 1269237 1273265 Vimu10g00209 10 1269237 1273265 ECH
Vimu7g01821 7 16576285 16580122 Vimu10g00209 10 1269237 1273265 PCT