Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01814 ATGAGTCAGGAATCGTTTATATACAGTTTCGTGGCTCGGGGGACGGTGGTGTTAGCAGAGTACACCGAGTTCACCGGGAACTTCCCTGCAATTGCAGCTCAGTGTCTCCAGAAACTACCCTCTTCCAATAACAAGTTCACCTACAATTGTGACCACCACACTTTCAATTTTCTCGTCGAAGATGGTTACGCTTACTGTGTTGTTGCCAAGGAATCTGTGAGCAAACAAATCTCTATTGCTTTCCTAGAACGTGTCAAAGCGGACTTTAGGAAAAGATATGGGGGTGGAAAGGCTGACACAGCTGTTGCCAAAAGTCTCAACAAGGAGTTTGGACCAGTAATGAAAGAGCACATGAAGTATATAATAGACCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAGAGTATCATGTTAGAGAACATTGATAAGGCCATTGATAGAGGAGAAAATCTAACTATTCTTGCCGACAAGTCTGAGACATTGCACTCACAAAATATTTTTGCATTCCTGGGAAATGAAAGTGAGAATGTATATTCCTGTGCTTGTTGGAAGGCCCAGGAGTTCAGAAAGAAGGGAACTCAAGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTTCTTGGAATTTTGTTGCTTTTGGTTCTGAGCAATTTCTTTGAAGTTTTAGCAAAAATCTGCTTAGAAGTGGGAGTTTGGCAACTGGAGAAAAAAAGTTTCCTACCTTCTTTGTTGGTTGATAATGGTATACGATATTCTTGGAAATTCTTAGAGAGGAGATTGGGTGTATCTCATGTGTTTGCAAATTCTGGCAAATTTGTTGGTGATATGAATTGA 870 0.4011 MSQESFIYSFVARGTVVLAEYTEFTGNFPAIAAQCLQKLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERVKADFRKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKSETLHSQNIFAFLGNESENVYSCACWKAQEFRKKGTQVRRKMWYQNMKIKLVVLGILLLLVLSNFFEVLAKICLEVGVWQLEKKSFLPSLLVDNGIRYSWKFLERRLGVSHVFANSGKFVGDMN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01814 289 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Vimu7g01814 289 Pfam Synaptobrevin 129 173 IPR042855 -
Vimu7g01814 289 Pfam Synaptobrevin 192 227 IPR042855 -
Vimu7g01814 289 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 210 IPR042855 -
Vimu7g01814 289 CDD R-SNARE 129 208 - -
Vimu7g01814 289 Gene3D Longin domain 1 126 - -
Vimu7g01814 289 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016020|GO:0016192
Vimu7g01814 289 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016020|GO:0016192
Vimu7g01814 289 SUPERFAMILY SNARE fusion complex 126 212 - -
Vimu7g01814 289 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Vimu7g01814 289 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016020|GO:0016192
Vimu7g01814 289 Pfam Regulated-SNARE-like domain 32 110 IPR010908 -
Vimu7g01814 289 SMART Longin_2 31 113 IPR010908 -
Vimu7g01814 289 CDD Longin 7 120 IPR010908 -
Vimu7g01814 289 FunFam Vesicle-associated membrane protein 724 1 126 - -
Vimu7g01814 289 PANTHER SNARE PROTEINS 3 228 - -
Vimu7g01814 289 Gene3D - 127 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01814 Vimu-Chr7 16540078 16543289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01814 1 220 Miscellaneous Gene Families AT1G04760 62.727 9.60e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01814 K08511 - gmx:100781950 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01814 7 16540078 16543289 Vimu7g01814 7 16540078 16543289 ECH
Vimu7g01814 7 16540078 16543289 Vimu10g00207 10 1237923 1239856 PCT