Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00207 ATGAGTCAGGAATCGTTTATATATAGCTTCGTGGCTCGTGGGACAATGGTGTTGGCTGAGTACACGGAGTTCACCGGAAACTTCCCTGCCATTGCAGCTCAGTGTCTTCACAGGCTTCCCTCTTCCAACAACAAGTTCACTTACAACTGTGACCACCACACCTTCAATTTTCTGGTTGAGGATGGTTATGCATACTGTGTTGTTGCTAAGGAATCTGTTGGGAAGCAGATCTCTATTGCTTTCCTTGAACGGGTGAAAGCAGACTTTAAGAAAAGATATGGTGGTGGAAAAGCAGATACAGCTATTGCTAAGAGTCTGAACAAGGAACCAGTTATGAAAGGGCACATGAAGTATATAATCGATCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAGAGTATTATGTTAGAAAACATAGACAAGGCCATTGATAGAGGAGAAAATCTAACTATTCTTGCAGACAAGACAGAGACATTGCGTTCACAGGCTCAAGATTTCAGAAAGCAAGGAGCACAAGTCCATCGAAAGATGTGGTATCAGAACATGAAAATTAAACTAGTTGTTCTGGGAATTTTGTTGTTTTTGGTATTGGTTATCTGGCTTTCTATTTGTGATGGATTTGACTGTACAAACTAG 660 0.403 MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLHRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVGKQISIAFLERVKADFKKRYGGGKADTAIAKSLNKEPVMKGHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTILADKTETLRSQAQDFRKQGAQVHRKMWYQNMKIKLVVLGILLFLVLVIWLSICDGFDCTN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00207 219 Gene3D - 125 212 - -
Vimu10g00207 219 PANTHER SNARE PROTEINS 3 212 - -
Vimu10g00207 219 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 128 188 IPR042855 -
Vimu10g00207 219 PRINTS Synaptobrevin signature 153 172 IPR001388 GO:0016020|GO:0016192
Vimu10g00207 219 PRINTS Synaptobrevin signature 133 152 IPR001388 GO:0016020|GO:0016192
Vimu10g00207 219 PRINTS Synaptobrevin signature 189 208 IPR001388 GO:0016020|GO:0016192
Vimu10g00207 219 SMART Longin_2 31 112 IPR010908 -
Vimu10g00207 219 ProSiteProfiles Longin domain profile. 10 109 IPR010908 -
Vimu10g00207 219 CDD Longin 7 118 IPR010908 -
Vimu10g00207 219 Pfam Regulated-SNARE-like domain 32 101 IPR010908 -
Vimu10g00207 219 FunFam Vesicle-associated membrane protein 724 1 124 - -
Vimu10g00207 219 Gene3D Longin domain 1 124 - -
Vimu10g00207 219 Pfam Synaptobrevin 127 212 IPR042855 -
Vimu10g00207 219 FunFam Vesicle-associated membrane protein 726 126 212 - -
Vimu10g00207 219 ProSitePatterns Synaptobrevin signature. 146 165 IPR001388 GO:0016020|GO:0016192
Vimu10g00207 219 SUPERFAMILY SNARE-like 6 107 IPR011012 -
Vimu10g00207 219 CDD R-SNARE 127 186 - -
Vimu10g00207 219 SUPERFAMILY SNARE fusion complex 124 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00207 Vimu-Chr10 1237923 1239856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00207 1 218 Miscellaneous Gene Families AT1G04760 66.818 2.44e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00207 K08511 - gmx:100527252 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00207 10 1237923 1239856 Vimu10g00207 10 1237923 1239856 ECH
Vimu7g01814 7 16540078 16543289 Vimu10g00207 10 1237923 1239856 PCT