Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01798 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCAGCATTGGCTCTCCGTGGGTCACCACTTTCCATCTCCCAATTCCAAAAGGCCCAGACTGTCGGCAACATCCGACAACCACGCGCACTCTGTGTTATCCGCGAGTAGTATCGTTTCCAGAATTTCCAAATATCCTGAAGCCAAGCCACTGGTGCGTAGGGAGGTTCATGCACCGTGTAGACCCCGTAAGTTTGATTTTCCTACCTTTAATAGAATGAAATCGAGTTTGAATGCCAGTAGTAGCTATTATGATAGCAAGGAAGAGATTGTTAATGATGTGGGCAACACGCTGAGTGAAAATTACGAAAGGGCGAAGAATTCAGCGTTAGCTAGCATTAGGTTTGGGGAAAAGGGTAAGGAGGTGATAGAAGTGGATGATGGTAGTCCCAAGGGCATGGTTTCCGAAGATTCAGGTGTGGAGGAAGTTCATTTTAGGGAAGATGGACGGGATGTGCGCTCTGTGGTGACGGAGCACAAGTGGCAAGAGGGTGATTTGTTTGTGACTGAAGTGAAGGATTTGAAAGCTAAGGATGTGCGTGGCGGTCCTCAGCAGCAGTCAACTTCATCTGTGGTTTCGGAATTGACTAACGGCGATTTGAATGTTGTCAATGCTGTGAAGATGTTCGGCACTCTGTCTTTAACTCCCGAACGTGATCTTTCGGATGTTCATGCCTACAAGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGCTTAAGAGGCTGTCGGCTGAAATTAAGCTTAATGAGAAGCTAAGGTCCACATTTGAATTGTTGCGCCCGAAGAAGGAACTAGTACAGGAAGTGCCCTTTGAACCTTTTATTCCTCTTACTGAAGATGAAGAAGTTGAGGTTACACGTGCCTTTTCTGCCAACAGGAGGAAGATCTTGGTTGCCCATGAGAAATCTTGCATTGAGGTCTCAGGAGAAAAATTTCAATGCCTTAGACCGGGTGCATGGTTAAATGACGAGTTAATAAGTGGCAAGAGTGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGCCTACATGAATGTGATAAAATTTTTGTTCCTATTCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGAGAAGAAATTTCAGTACTTGGATTCACTGAAAGGAATAGATACCCATGTGATGGAAGTTCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATGGATGTAAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAACAGAATGGGTTTGTTTTCTTATCTTTTGCAATTCACTTAATAGATGATTAG 1365 0.441 MAVVTSNGKRRQHWLSVGHHFPSPNSKRPRLSATSDNHAHSVLSASSIVSRISKYPEAKPLVRREVHAPCRPRKFDFPTFNRMKSSLNASSSYYDSKEEIVNDVGNTLSENYERAKNSALASIRFGEKGKEVIEVDDGSPKGMVSEDSGVEEVHFREDGRDVRSVVTEHKWQEGDLFVTEVKDLKAKDVRGGPQQQSTSSVVSELTNGDLNVVNAVKMFGTLSLTPERDLSDVHAYKKLLEAVDKRSDTLKRLSAEIKLNEKLRSTFELLRPKKELVQEVPFEPFIPLTEDEEVEVTRAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDELISGKSGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKEKKFQYLDSLKGIDTHVMEVLASYIVDEVKDKTGKDMDVSSWEKEFVEDLPEQQNGFVFLSFAIHLIDD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01798 454 Gene3D Adenoviral Proteinase; Chain A 276 454 - -
Vimu7g01798 454 ProSiteProfiles Ubiquitin-like protease family profile. 269 454 IPR003653 GO:0006508|GO:0008234
Vimu7g01798 454 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 32 443 - -
Vimu7g01798 454 Pfam Ulp1 protease family, C-terminal catalytic domain 343 441 IPR003653 GO:0006508|GO:0008234
Vimu7g01798 454 SUPERFAMILY Cysteine proteinases 284 442 IPR038765 -
Vimu7g01798 454 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01798 Vimu-Chr7 16434518 16440298 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01798 K08592 - gmx:100805645 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01798 7 16434518 16440298 Vimu7g01798 7 16434518 16440298 ECH
Vimu7g01798 7 16434518 16440298 Vimu10g00196 10 1168605 1174792 PCT