Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00196 ATGGGTGCGATGACCACCAACCGCAAGCGCACCGAAGAATGCATGAACGTAAACCTCACTAATTCAGATTCCTCCCGTAAACGCTCCAAATTATCTACCAAACCCGTTCCGTCCGCCGCCAGCGCCATCGCGCGACTCTCCAGGTATCCGCAGGTTAACGCGCCGTTCGCGAGGGAGGTTCACGCACCGTGTCGGCCGACAAAATTTCCACTCTCTGCTAGGGTTAGCAGTCGCACCGGCGATGCCATGGGGAACGTTCTGATCGCCAAGTTCGAGAAGGCGAAGCGTTCGGCGTTGGAGAAGTGTAGGTCAGTGGTGGAGAAGGGAAAGGAGGTGATTGTAGTGGACGCGGAGAGTGATGAGCCTTGTGCGGATTCGAGTGTGGAAGAACTGCATGATGACGGTGGCAAGTTTGGGGTTCAGCGGCAGTCGCAGTCGACGTTATCGTTTGATTCGGAGCTGAGGAATGCGGAATTGAAGGTAGCGAGTAGAGGGGAGTTGTGGGGTTCTGAGACGCAGCTTGATGTTGAAAGTGTTCATGCGTATAAGAAGTTGCTTGAGGATGTTGGGAGGAGAAATGGCACATTCCAGAGGCTGAATTTTGAGATTGACCTGAACGAGAAGCGCAGGGACCATTTTAATTTGTTGAGGCCGAAGAAGGAATTGGAGGAATCAGAAGCGCTGAAAGAACCATTTGTTGCTCTTAGTAATGAGGAAGAAGATGAGGTTGAGCGTGCCTTCTCTGCCAACCGTTGGAAAATCTTGGTTACCCATGAGAATTCTAATATTGAGATTACGGGAGAAAAGTTTCAATGCCTTAGGTCAACTGGATGGTTAAATGATGAGGTGATAAATTTGTATTTAGCTTTGCTGAAGGAGAGGGAACAAAGGCAGTCACATAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAGAGCTCCCAAGTGTGCTTGTGGCCAACCCATGACACTCTAGTGGAGTTTTCAGCTAACTTGCACACTGGAACTCCGATCTCTCTCTCAGTTTATTTAATAAGTGGCCCAAATGGTTATGATTTCAAATCTGTCAGAAGATGGACAAGCCAACGGAAATTGGGATACAGTTTACTTGAATGTGATAAAATATTTGTACCTATCCATCAAGAGATACATTGGTGCTTGGCAGTCATCAATATTAAAGATAAGAAATTGCAGTATCTTGACTCAATGAAAGGAGAGGATAGATCTGTGCTAGAAAAGCTGGCTAAATATTTTACGGATGAAGTAAATGACAAGAATGGACAAGATATTGGTGTTTATACTTGGAAAAAAGAATTTGTGAAAGACCTTCCTGTTCAGAAAAATGGGTGTGATTGTGGGGTGTTTATGATCAAATATGTGGACTTTTATAGCAGGGGCCTGGAGCTATATTTTGACCAGGTAGGACTTGGAGCATTTCATTTAATTAGGCATTTCAAATATGCTAAACAAGGAAACATGCCTTACTTCCGGCGTAGGACAGCAAAGGAGATCTTGAGACTGAAAGCTGAATGA 1542 0.4488 MGAMTTNRKRTEECMNVNLTNSDSSRKRSKLSTKPVPSAASAIARLSRYPQVNAPFAREVHAPCRPTKFPLSARVSSRTGDAMGNVLIAKFEKAKRSALEKCRSVVEKGKEVIVVDAESDEPCADSSVEELHDDGGKFGVQRQSQSTLSFDSELRNAELKVASRGELWGSETQLDVESVHAYKKLLEDVGRRNGTFQRLNFEIDLNEKRRDHFNLLRPKKELEESEALKEPFVALSNEEEDEVERAFSANRWKILVTHENSNIEITGEKFQCLRSTGWLNDEVINLYLALLKEREQRQSHKFLKCHFFNTFFYKKSSQVCLWPTHDTLVEFSANLHTGTPISLSVYLISGPNGYDFKSVRRWTSQRKLGYSLLECDKIFVPIHQEIHWCLAVINIKDKKLQYLDSMKGEDRSVLEKLAKYFTDEVNDKNGQDIGVYTWKKEFVKDLPVQKNGCDCGVFMIKYVDFYSRGLELYFDQVGLGAFHLIRHFKYAKQGNMPYFRRRTAKEILRLKAE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00196 513 MobiDBLite consensus disorder prediction 1 36 - -
Vimu10g00196 513 Pfam Ulp1 protease family, C-terminal catalytic domain 278 317 IPR003653 GO:0006508|GO:0008234
Vimu10g00196 513 Pfam Ulp1 protease family, C-terminal catalytic domain 355 504 IPR003653 GO:0006508|GO:0008234
Vimu10g00196 513 Gene3D Adenoviral Proteinase; Chain A 232 511 - -
Vimu10g00196 513 MobiDBLite consensus disorder prediction 1 39 - -
Vimu10g00196 513 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 110 506 - -
Vimu10g00196 513 ProSiteProfiles Ubiquitin-like protease family profile. 263 466 IPR003653 GO:0006508|GO:0008234
Vimu10g00196 513 SUPERFAMILY Cysteine proteinases 231 511 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00196 Vimu-Chr10 1168605 1174792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00196 K08592 - gmx:100802161 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01798 7 16434518 16440298 Vimu10g00196 10 1168605 1174792 PCT