Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01784 ATGCATGCACAACACAAATCCCCAAAGACATACCCGACACTTGCCCAGGTATTAGAAGAAGTAAAGAGAATGACAGACATAGGGTTCCCAATATCAGCCATGAGCCTTGTGGGGTACCTTAAAAACTTGACCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTGGAGTTAGCCGGAGGCTCTTTGGCCATAGGTTTCACCAACATAACTGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTAGAAACTTCTCCTTACTCTCTCTAACTCTGCACAGAACAATTCTCATGTTACTTCTATTTTCCCTTCCCATTTCTCTTCTGTGGCTCAACCTCCAACCTCTCATGCTTTTCCTTCGTCAGAATCCAGACATAACCCGTGTAGCAACCCTCTATTGCCACTTCGCCATCCCAGACCTCATAGCCAATAGCTTCCTCCACCCTCTTCGCATCTATCTACGCAGCAAAGGAACAACTTGGCCACTGCTGTGGTGCACTTTACTTTCCATTCTTCTACACCTTCCCACCATCACCTTTCTAACCTTCAAACTCCACCTTGGCGTTCCGGGAATCGCTGTTTCATCCTTCGTTGCCAATTTCAACAACCTTTTCTTCCTTCTTCTGTACATGCTCTATACACGCGTTCCCGAGGAGTCCTTACACATGCCGTTACTACTGTCTCCTACCATGTCACATAATAATGTGATAACATGTGGTAGCAGTGGTAGTACTCTTGCCATGGAGTGGGGTGTGCTACTGAAATTTTCAATACAAAGTTGTCTGGCTGTTTGCTTGGAATGGTGGTGGTACGAATTGATGACAATTTCCGCAGGCTACCTCAACAACCCTCGTGTTGCTCTAGCCACGGCTGGCATAGTGATACAAACCACGTCTCTTTTGTACACTTTGCCAACAGCACTGAGTGCATCGGTGTCAACGAGAGTAGGGAATGAGCTTGGGGCGGGGCAAGCTGAAAGAGCGAGTTTGGCAACGGTGGTAGCGATTGGATTAGCACTTGCAAGCTCAATTTTTGGTTTAGTGTGGACCACTATGGGAAGAGAAAAGTGGGGGAGAGTGTTCACCAGTGACGGTGAGGTGCTGCAACTGAGTATGGCAGTCTTACCTATAATTGGAGTTTGTGAGTTAGCGAATTGTCCACAAACCACAAGCTGTGGAATCCTGAGAGGAAGTGCTAGGCCTGGTGTTGGGGCAGTTATAAACTTTTGCTCCTTTTATTTGGTGGGAGCACCGGTAGCCATTGTTTTAGCCTTCGTTTGGAAACTTGGGATGGTTGGGCTGTGTTATGGATTGCTGGCAGCACAGATCGCATGTGTGGTGTCAATTTTCATTGTGGTGTACAAAACTGACTGGGAAATGGAGTCATTGAAAGCCAGAAGCTTGGTGGGAAAGGGTGTGTGTGGCACTTTCGCATTTCATCACAACCAAATTACGGTCAAATGTGAAGAACCTGTTGTCTTTCTCAAAGACAACAACTCAAAAGTGAACAGGTTACGCCCCTGA 1554 0.473 MHAQHKSPKTYPTLAQVLEEVKRMTDIGFPISAMSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLHRTILMLLLFSLPISLLWLNLQPLMLFLRQNPDITRVATLYCHFAIPDLIANSFLHPLRIYLRSKGTTWPLLWCTLLSILLHLPTITFLTFKLHLGVPGIAVSSFVANFNNLFFLLLYMLYTRVPEESLHMPLLLSPTMSHNNVITCGSSGSTLAMEWGVLLKFSIQSCLAVCLEWWWYELMTISAGYLNNPRVALATAGIVIQTTSLLYTLPTALSASVSTRVGNELGAGQAERASLATVVAIGLALASSIFGLVWTTMGREKWGRVFTSDGEVLQLSMAVLPIIGVCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFIVVYKTDWEMESLKARSLVGKGVCGTFAFHHNQITVKCEEPVVFLKDNNSKVNRLRP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01784 517 Pfam MatE 270 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu7g01784 517 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu7g01784 517 CDD MATE_eukaryotic 20 474 IPR045069 GO:0042910|GO:1990961
Vimu7g01784 517 NCBIfam MATE family efflux transporter 40 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu7g01784 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01784 Vimu-Chr7 16343684 16345401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01784 K03327 - gmx:100798616 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01784 7 16343684 16345401 Vimu7g01784 7 16343684 16345401 ECH
Vimu7g01784 7 16343684 16345401 Vimu10g00175 10 1048591 1050371 PCT