Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00175 ATGTCTAAGATGGTTGCGGAGGAGAAACCCCAAAAGACATACCCGACAACTGCTGAGGTAGTGGATGAGTTAAAGAGAATGGGGGACATAGGAGTTCCAATAGCAGCAATGAGCCTTGTGGGATACATCAAAAACATGGTGTTGGTTGTGTGCATGGGAAGGTTGGGAAGCCTTGAGTTAGCTGGTGGTGCTTTGGCCATAGGCTTCACCAACATAACTGGTTTCTCTGTCCTCTCAGGTTTAGCCATGGGAATGGAACCTCTTTGCACGCAAGCTTTTGGTTCAAGAAACTTGTGTTTGGTCTCTCTAACTTTACAAAGGACAATTTTCATGTTACTGGCAGCTTCACTGCCCATATGTTTCCTGTGGCTGAAGCTCGAGCCTCTGATGCTATGGCTTCAGCAGAACCCTGAGATAACCAAAGTCGCAAGCATCTATTGCCGCTTCTCCATCCCAGACCTCATTGCGAACAGCTTCCTTCACCCAATTCGAATCTATTTACGTAGCAAAGGGACAACATGGCCTCTACTGTGGTGCACTTTGCTGTCCATTCTCATACACATCCCTGTCGTGACTTTTTTTACCTTCAAACTCCACCTTGGTGTACCCGGGATTGCTATGTCAGCTTTTGTTGCCAACTTCAACACCCTTTTCTTCCTCCTATCATACATGCTCTACATGCGCGTCTCAAAGGGGTCACTTTCCATGCCTTTATTAATATCTCGTCCCTTGTCATCACGACAACAAGACCAAAACTTAACCAGTCTTATCAGTTCCACAACAGCAGCACCAACAACAACAACAACCTCGTTAGGCAAAGAGTGGGGCACACTGATAAGGTTTTCAATTCAGAGTTGCTTAGGAGTGTGCTTGGAATGGTGGTGGTACGAGTTCATGACAATTCTAGCAGGCTACCTTTACAATCCGCGTGTAGCCTTAGCCACCGCTGGCATAGTAATTCAAACGACATCTCTTATGTACACTTTACCAACAGCACTGAGTGCTTCAGTGTCAACAAGAGTGGGGAATGAACTCGGGGCGGGTCAACCCGAGAGGGCAAGGTTGTCAACAATTGTGGCAATAGGAATGGCTCTTGCAAGTTCAATATTGGGTTTGTTATGGACCACATTAGGGAGAGAGAGATGGGGAAGGGTTTTCACCAGTGATAGTGAGGTGTTGGAACTTACCATGAGTGTTTTACCCATAATTGGGATATGTGAGTTAGCAAACTGTCCTCAAACCACAAGCTGTGGAATCCTTAGGGGAAGTGCTAGGCCTGGTGTTGGGGCAGGGATAAATTTCTATTCATTTTACTTGGTGGGGGCACCAGTGGCTATAGTGATGGCATTTTTTTGGAGACTAGGGTTGGTGGGTCTTTGCTATGGGCTGTTGGCAGCACAGATAGCATGTGTGGTCTCTATTCTAGTTGTGGTATACAACACAGATTGGGAAAGGGAGTCCTTGAAGGCAAAAAGCTTGGTGGGAAAGACTTCATGTGACACAACGGAACATGGAGACCAAACACTAGTCAAATGTGAAGAAGGTCTTGTCTTTCTCAATGAGAAGAACAGATCCCTAAAGTGA 1584 0.4609 MSKMVAEEKPQKTYPTTAEVVDELKRMGDIGVPIAAMSLVGYIKNMVLVVCMGRLGSLELAGGALAIGFTNITGFSVLSGLAMGMEPLCTQAFGSRNLCLVSLTLQRTIFMLLAASLPICFLWLKLEPLMLWLQQNPEITKVASIYCRFSIPDLIANSFLHPIRIYLRSKGTTWPLLWCTLLSILIHIPVVTFFTFKLHLGVPGIAMSAFVANFNTLFFLLSYMLYMRVSKGSLSMPLLISRPLSSRQQDQNLTSLISSTTAAPTTTTTSLGKEWGTLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPERARLSTIVAIGMALASSILGLLWTTLGRERWGRVFTSDSEVLELTMSVLPIIGICELANCPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAIVMAFFWRLGLVGLCYGLLAAQIACVVSILVVVYNTDWERESLKAKSLVGKTSCDTTEHGDQTLVKCEEGLVFLNEKNRSLK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00175 527 Pfam MatE 286 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g00175 527 Pfam MatE 33 190 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu10g00175 527 CDD MATE_eukaryotic 23 489 IPR045069 GO:0042910|GO:1990961
Vimu10g00175 527 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00175 Vimu-Chr10 1048591 1050371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00175 K03327 - gmx:100785533 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00175 10 1048591 1050371 Vimu10g00175 10 1048591 1050371 ECH
Vimu7g01784 7 16343684 16345401 Vimu10g00175 10 1048591 1050371 PCT