Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01772 ATGTTAAACAACAGTGGCAGAGAAAGAAGGATTATTTCCCCGAGGAGGCCTATATGTTCAAACTTTGAAGGCTCAAAAACAATAAAAACAAGAAATAAAAAAAGAAATAAAAGTGTAAGGCATCGGGGTGCAATGGCCATTGCAAAGAGCGCTGTTCTTATCTTGCTCTTTGCATTGGTCTGCAACGCGAACGGAGGAGCACCAGACCAACCACGTATTGCTGGTCCTGACATGTTCAAGAATAAAAATGTGGCTAAGGATGTTCTACTTCCTGGCGAGCAAGTAATTAACGTCATGGATTTTGGAGCCAAAGCTGATGGCAGGACCGATTCCACCCAGGCGTTCATGGATGCATGGCGAAAGGTGTGCCATCAAACGACGGGACCAGCGAGGCTTTTGATTCCTGAAGGCAGATTCTTGATTTCATCTATGTATTTCAGTGGACCATGCACTTGTCAAACTCCAGTAACAATTCAAGTTAAAGGGTATGTGATGGCTACCACGGATATTTCAGAGTATGAAAACGGCGACTGGCTCATGTTCGAGAAGCTCAATGGGCTGAAAATTATTGGCGGGGGAACTTTTGATGGCCAGGGAAAAAAGTCGTGGGAGTACTCCGAGAATTGCGAATCAGGCGATGACCGTGCTTGCGCCAGGAATCCAAGCAGCCTTTTCTTCAGCGATTGCAGCAACGTGGTTGTACAGGGCATCAGGACTGCTAATCCCAAAGGCTTTCACATATTCGTTACCAAATGTACAAACGTAAGATTGAGAAAACTGAAGCTGGTTGCCCCCGAAACCAGCCCCAACACTGATGGCATCCATGTCAGCCACTCTGACACCGTGATTATGTCCCGAAACACCATTGCAACTGGGGATGATTGCATCTCTATGATACAAGGAGTGAAAAATGTTTTCATCAACAGACTCAAGTGTGGCCCTGGCCACGGTATAAGTATCGGTAGCCTTGGGAAATATCAGAATGAGGAAGAGGTGAGAGGCATTCGCATTCAGAATTGCTCATTGATCAACACCACCAATGGCCTCAGAGTGAAAGCATGGCCAGATAGATATCCAGGTGCAGCATCAGACATAAGCTTCAGTAACATTAACATGCAAAATGTCAGGAACCCTATCATCATTGACCAAGAGTATGAATGTTATCCAGACTGCAAAAAGAAGCCGTCACTTGTAAGGATCCAAAATGTTCATTTCCAAAATGTGAAAGGAACAACAACTTCACCACTTGCAGTGGACTTAAGGTGCAGCAAGCTGTTTGGGTGCCAAGGTGTTACAGTTAAAGACATTGACCTGAAGTTTGGAGATGCCCCAACCACCTCAAGATGTGTCAATACTCAACCTCGCTTTGCTGGTGTGCTAATGCCCCCACCTTGCGCATAG 1401 0.4554 MLNNSGRERRIISPRRPICSNFEGSKTIKTRNKKRNKSVRHRGAMAIAKSAVLILLFALVCNANGGAPDQPRIAGPDMFKNKNVAKDVLLPGEQVINVMDFGAKADGRTDSTQAFMDAWRKVCHQTTGPARLLIPEGRFLISSMYFSGPCTCQTPVTIQVKGYVMATTDISEYENGDWLMFEKLNGLKIIGGGTFDGQGKKSWEYSENCESGDDRACARNPSSLFFSDCSNVVVQGIRTANPKGFHIFVTKCTNVRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINRLKCGPGHGISIGSLGKYQNEEEVRGIRIQNCSLINTTNGLRVKAWPDRYPGAASDISFSNINMQNVRNPIIIDQEYECYPDCKKKPSLVRIQNVHFQNVKGTTTSPLAVDLRCSKLFGCQGVTVKDIDLKFGDAPTTSRCVNTQPRFAGVLMPPPCA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01772 466 Pfam Glycosyl hydrolases family 28 126 453 IPR000743 GO:0004650|GO:0005975
Vimu7g01772 466 Gene3D - 90 459 IPR012334 -
Vimu7g01772 466 FunFam Pectin lyase-like superfamily protein 85 463 - -
Vimu7g01772 466 SUPERFAMILY Pectin lyase-like 92 465 IPR011050 -
Vimu7g01772 466 SMART pbh1 332 353 IPR006626 -
Vimu7g01772 466 SMART pbh1 395 435 IPR006626 -
Vimu7g01772 466 SMART pbh1 362 383 IPR006626 -
Vimu7g01772 466 SMART pbh1 229 249 IPR006626 -
Vimu7g01772 466 SMART pbh1 279 300 IPR006626 -
Vimu7g01772 466 SMART pbh1 252 278 IPR006626 -
Vimu7g01772 466 ProSitePatterns Polygalacturonase active site. 309 322 IPR000743 GO:0004650|GO:0005975
Vimu7g01772 466 PANTHER - 94 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01772 Vimu-Chr7 16279720 16282652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01772 95 465 Glycoside Hydrolase AT4G18180 42.268 8.35e-109 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01772 K01213 - gmx:100800324 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01772 7 16279720 16282652 Vimu7g01772 7 16279720 16282652 ECH
Vimu7g01772 7 16279720 16282652 Vimu10g00163 10 963496 965913 PCT