Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00163 ATGGGCATGACAGAAAGAGTAGGTGTTCTTATTCTGTACGTTGCACTGGTTTATCATGTGGGTGCTGCCAAGAAAGTAATGCCAGTTGCTGGTCCTGATATCTACAAGAATAAAAACTTAGATCAGGATATACTTCTTCCAGGGGAAAAGATAAACAATGTCATAAGCTTTGGGGCCAAAGCTAATGGCAAGTTTGACTGCACTCAGGCTTTCATGGATGCATGGCGAGCAACTTGCCACTCCAAAGTGCAAGCCAGGCTTCTTGTTCCAGAGGGAACATTTGTGCTTTCTTCCATGTTTTTTGCAGGTCCATGTTCTACTCCAGAGCCCGTAACGATCCAAGTTGTAGGCACCATTGCTGCTACAACAGATCTCAGTGAATATGAGAATAACGAATGGCTTTTTTTTGAGGACATGGATGGTATAAAAATCATCGGTGGTGGTACTTTTGATGGTGTCGGTAAGGAATCATGGAAAACGGCTACAGACTGTAAAGCAGACCCCAGCGCAACCTGCATCAGAAACCCTTCTAGTATATATTTCCACAGAATTAAGAATGGAATTATACAGAACGTTACATCCACAAACCCCAAAGGCTTTCACATATTTGTGACTAATTGTGCTAACATCAGACTCCGACGGCTTAACCTCACTGCACCAGATGATAGCCCTAACACAGATGGAATTCATATTAGCCAGTCAATCGATGTTGAAGTAGCCAGAAATACCATTGAAACTGGAGATGATTGTATTGCCATGTTACACGGATGCCACCAAGTTTCCATCAACAATGTGAGTTGTGGTCCTGGACATGGTATAAGTATTGGTAGTCTTGGAAAGGTCGAGGAAGAGCTAGAAGTGAAAGACATTCAAGTGAAGAACGTGTCGATGGTTGGTACAGAAAATGGCGTGAGAATCAAGACATGGCCAGATAGGTATGCTGTCAATGCATCAAACATCACCTTCAGTGACATCACCATGCAAAATGTTAAAAACCCTATTGTCATTGACCAAGAATATCAGTGCTCTTCAAAATGCAAGGCTTCGCTTGTAAAGATAAAAGATGTTGTTTTTTCTAATATAAAGGGAACCACTACTTCGCCAATTGCAGTGGATTTAAGGTGTAGCAGCAAGTTCCCTTGTGAAAGTATTAATCTTGAAAACATAGGCCTGTCGCTTAATTCCAAGCCGACAGGATCTAGATGTGTCAACATTAAACCAATTTACAAGGGCTTGCAAAATCCACCAGGTTGTCTATAA 1260 0.4175 MGMTERVGVLILYVALVYHVGAAKKVMPVAGPDIYKNKNLDQDILLPGEKINNVISFGAKANGKFDCTQAFMDAWRATCHSKVQARLLVPEGTFVLSSMFFAGPCSTPEPVTIQVVGTIAATTDLSEYENNEWLFFEDMDGIKIIGGGTFDGVGKESWKTATDCKADPSATCIRNPSSIYFHRIKNGIIQNVTSTNPKGFHIFVTNCANIRLRRLNLTAPDDSPNTDGIHISQSIDVEVARNTIETGDDCIAMLHGCHQVSINNVSCGPGHGISIGSLGKVEEELEVKDIQVKNVSMVGTENGVRIKTWPDRYAVNASNITFSDITMQNVKNPIVIDQEYQCSSKCKASLVKIKDVVFSNIKGTTTSPIAVDLRCSSKFPCESINLENIGLSLNSKPTGSRCVNIKPIYKGLQNPPGCL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00163 419 SMART pbh1 317 338 IPR006626 -
Vimu10g00163 419 SMART pbh1 287 308 IPR006626 -
Vimu10g00163 419 SMART pbh1 234 255 IPR006626 -
Vimu10g00163 419 SMART pbh1 207 233 IPR006626 -
Vimu10g00163 419 SMART pbh1 184 204 IPR006626 -
Vimu10g00163 419 PANTHER - 51 404 - -
Vimu10g00163 419 Gene3D - 47 416 IPR012334 -
Vimu10g00163 419 FunFam Pectin lyase-like superfamily protein 42 416 - -
Vimu10g00163 419 SUPERFAMILY Pectin lyase-like 49 419 IPR011050 -
Vimu10g00163 419 Pfam Glycosyl hydrolases family 28 79 406 IPR000743 GO:0004650|GO:0005975
Vimu10g00163 419 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00163 Vimu-Chr10 963496 965913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00163 53 418 Glycoside Hydrolase AT4G18180 41.299 8.91e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00163 K01213 - gmx:106796220 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00163 10 963496 965913 Vimu10g00163 10 963496 965913 ECH
Vimu7g01772 7 16279720 16282652 Vimu10g00163 10 963496 965913 PCT