Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01759 ATGATTGATGATTGGTGTGGGGTCCAGTCTCCTTTGTGTTCTGTCAATTCCACATGCATTTCCTCATTATTATTCCATTCCTTGTTCCCTCACCCACCGTTTCACAGACTCCCTCCTACTACTTCTTACGTGTTCTATCTCTCCACTGTACATTCTCTGCCACGTGTGCCATCTCATACAGCCTATGAACTATCTTGCATAAAGCTGTCTCTGTCTTCCTCTTCTCCTTGCTTCTGGCTCCTCTCCTTCAATATTCTTTCTCTGCCCCTGCAATTCTTTTTTATTTGGTTCTTTCTTGGTGATTGTGTCCCTTGTGCTCTGTCACAAGTTTTGACCCAAGAACATGCTAGTACGTATGTTTCTCTGCTTGATTTTGTTCTGTTGTCTTATATTGCTGTTGGGTTTATAATTGTAGCATTACTCCTGCTGCTGTCGCTAAGCAACGAAGTCAGAGTCAATGGGCAGTGTGAGCATAATCCAGCACCAAAGCCAAGACCGCACACTGTGTCCATCCTGGAGTTTGGAGCGGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCAGGAACATGGTTGACTAAAAGTTTCAATCTTACTAGCCATCTGACACTGTTCTTGGAAAAAGGTGCTGTCATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTATGGTCGAGGAGTCGAAGTTCCCGGGGGAAGATATCAGAGTTTAATAAATGGATACATGTTAGATGATGTGGTGATAACAGGTAATAGTGGAATCATTGATGGCATGGGATTGGCATGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCCCATATTATTGAATTAGTGGCATCTGATAATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATACAGCATCCACCCAGTTTATTGCAGCAATGTACATATTTACAATGTTTCAATTTCTGCTCCTCCAGAATCCCCTTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATCGAAACGGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATTTGCAAGCTTCTTCTGGGTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTTATCTTTACAATTCAAGGAGTGGCATTGAATTCAGAACTATGAGGGGTAGAGGTGGTTATATCAAGGAAATAGTCATATCAGAGATAGAAATGGAGAATATATACACTGCAATGGCCGCCACAGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCAAATGCTCTTCCACTTTTGGACCACATTACTTTCCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCCGGTCTACAAGAATCTCCCTTCACAAACATATGCCTTTCCAACATAAATTTGTCTATAAATGCAGTTTCTTCCATTCCTTGGGAATGTTCAAATATCTCTGGATTTTCAGAATCTGTTCTTCCCAAACCCTGTCCTGATCTCGAGACCCTTTCGGATTGTCTCTCCCTTCTGAGTGTCAAGGGAAAAGCTGCGGACATGTGA 1740 0.4247 MIDDWCGVQSPLCSVNSTCISSLLFHSLFPHPPFHRLPPTTSYVFYLSTVHSLPRVPSHTAYELSCIKLSLSSSSPCFWLLSFNILSLPLQFFFIWFFLGDCVPCALSQVLTQEHASTYVSLLDFVLLSYIAVGFIIVALLLLLSLSNEVRVNGQCEHNPAPKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTKSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLDDVVITGNSGIIDGMGLAWWELFSSHSLNYSRPHIIELVASDNVVVSNLTFLNAPAYSIHPVYCSNVHIYNVSISAPPESPYTIGIVPDSSDHVCIEDCVIETGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVYLYNSRSGIEFRTMRGRGGYIKEIVISEIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHITFQDMIGTNITIAGSFAGLQESPFTNICLSNINLSINAVSSIPWECSNISGFSESVLPKPCPDLETLSDCLSLLSVKGKAADM 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01759 579 Gene3D - 147 550 IPR012334 -
Vimu7g01759 579 SMART pbh1 313 335 IPR006626 -
Vimu7g01759 579 SMART pbh1 397 419 IPR006626 -
Vimu7g01759 579 SMART pbh1 425 446 IPR006626 -
Vimu7g01759 579 SMART pbh1 363 384 IPR006626 -
Vimu7g01759 579 SMART pbh1 336 362 IPR006626 -
Vimu7g01759 579 PANTHER PECTIN LYASE-RELATED 141 561 - -
Vimu7g01759 579 Pfam Glycosyl hydrolases family 28 266 546 IPR000743 GO:0004650|GO:0005975
Vimu7g01759 579 Pfam Pectate lyase superfamily protein 169 226 IPR024535 -
Vimu7g01759 579 SUPERFAMILY Pectin lyase-like 160 559 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01759 Vimu-Chr7 16201976 16206124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01759 133 572 Glycoside Hydrolase AT3G06770 61.625 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01759 - - gmx:100802343 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01759 7 16201976 16206124 Vimu7g01759 7 16201976 16206124 ECH
Vimu7g01759 7 16201976 16206124 Vimu10g00154 10 870405 872489 PCT