Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00154 ATGATCGATGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAGCGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGAGATGGTAGAACACTCAACACCATTGCATTCCAGAACGCCATCTTCTATCTCAAGTCATTTGCCGATAAGGGTGGCGCTCAGCTCTATGTTCCTCCCGGTAAATGGCTCACCGGAAGCTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTGTTGAACCCTTGCCTTCGTATGGCCGAGGCCTTGAAGTTCCCGGGGGAAGATATCAGAGTTTGATAAATGGATACATGTTACATGATGTGGTTGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCTCATTCCTTGAACCATAGCCGTCCTCATCTGGTTGAAATTGTGGCATCTGATAATGTGGTGGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTCTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTGCTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGAATATGTGTGTATAGAAGATTGTATTGTTGGCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCAACTGAGAATGTGCACATCAGAAGGGTGCATCTTCATGCATTTTCTGGGTCTGCTCTTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATGTTGTAGTGGAGCATGCTCATGTTATGAAGTCAAACAGTGGCATTGAGTTTAGAACCATAAGAGGAAGAGGTGGTTATATGAAAGATATTGTTATATCAGACATAGAAATGGAAAATGTGCACACAGCAATTGCTGCCACTGGTAACTGTGGGTCTCATCCTGATGACAATTTTGATCCAAATGCACTCCCACTTTTGCATCACATTACATTGAGAGATGTCACAGGCACAAACATTACCATTGCTGGAAACTTTGCTGGAATAGAGGAATCCCCTTTCACAAACATATGCCTTTCCAACATAACCTTGTCAACAAATTCTGTTTCTCCCATGACATGGGAATGCTCAAATGTGTCTGGATTTTCAGACTCAGTGCTCCCAGAACCTTGTCCTGAACTTGGAAACCCCTCATATGATTCTTCTTCCTCCTGTTTCTACCTTATGAGTATCAGTGGAAAAACTGCAGTGCAGTGA 1362 0.4383 MIDVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGRTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDNVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPYTVGIVPDSSEYVCIEDCIVGMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVVVEHAHVMKSNSGIEFRTIRGRGGYMKDIVISDIEMENVHTAIAATGNCGSHPDDNFDPNALPLLHHITLRDVTGTNITIAGNFAGIEESPFTNICLSNITLSTNSVSPMTWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLMSISGKTAVQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00154 453 SMART pbh1 232 253 IPR006626 -
Vimu10g00154 453 SMART pbh1 182 204 IPR006626 -
Vimu10g00154 453 SMART pbh1 294 315 IPR006626 -
Vimu10g00154 453 SMART pbh1 357 379 IPR006626 -
Vimu10g00154 453 SMART pbh1 205 231 IPR006626 -
Vimu10g00154 453 SMART pbh1 266 288 IPR006626 -
Vimu10g00154 453 SMART pbh1 323 344 IPR006626 -
Vimu10g00154 453 PANTHER PECTIN LYASE-RELATED 9 440 - -
Vimu10g00154 453 Gene3D - 27 419 IPR012334 -
Vimu10g00154 453 Pfam Glycosyl hydrolases family 28 136 415 IPR000743 GO:0004650|GO:0005975
Vimu10g00154 453 SUPERFAMILY Pectin lyase-like 33 429 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00154 Vimu-Chr10 870405 872489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00154 1 429 Glycoside Hydrolase AT3G06770 63.908 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00154 - - gmx:100777503 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00154 10 870405 872489 Vimu10g00154 10 870405 872489 ECH
Vimu7g01759 7 16201976 16206124 Vimu10g00154 10 870405 872489 PCT