Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01754 ATGGCTGTTTTCACATTCGACGACCAAGCCACTTCTCCTGTGGCTCCTGCCACCCTCTACAACGCTCTTGCTAAAGACGCCGACAACATCATCCCAAAGGCTGTTGGTTCCTTCCAGAGTGTTGAAATCGTCGAGGGCAACGGTGGTCCCGGAACCATCAAGAAGATCTCTTTCGTTGAAGATGGAGAGACAAAGTTTGTGTTGCACAAAATAGAAACAATAGATGAGGCAAACTTGGGATACAGCTACAGCATTGTTGGAGGTGTTGCCTTGCCAGACACTGCAGAGAAGATCACAATCGACACTAAAATCAGTGACGGTGCCGACGGAGGATCACTTATAAAGCTGACCATATCCTACCACGGCAAAGGAGATGCACCACCCAATGAAGATGAGCTCAAAGCTGGCAAAGCCAAGAGTGATGCTCTTTTCAAGGCTGTTGAGGCTTACCTTTTGGCCAATCCCTGA 468 0.485 MAVFTFDDQATSPVAPATLYNALAKDADNIIPKAVGSFQSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIETIDEANLGYSYSIVGGVALPDTAEKITIDTKISDGADGGSLIKLTISYHGKGDAPPNEDELKAGKAKSDALFKAVEAYLLANP 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01754 155 FunFam Major pollen allergen Bet v 1-A 1 155 - -
Vimu7g01754 155 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu7g01754 155 CDD Bet_v1-like 4 151 - -
Vimu7g01754 155 Gene3D - 1 155 IPR023393 -
Vimu7g01754 155 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vimu7g01754 155 PANTHER - 1 155 - -
Vimu7g01754 155 SUPERFAMILY Bet v1-like 4 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01754 Vimu-Chr7 16170746 16172941 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01754 - - gmx:100527097 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01754 7 16170746 16172941 Vimu7g01754 7 16170746 16172941 ECH
Vimu10g00149 10 850263 851130 Vimu7g01754 7 16170746 16172941 PCT