Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00149 ATGGGAATTGTGACTACTGAAAGTGACCTAGTTTCTGCAGTGGCACCTGCAAGACTATACAAAGCCATTGTCCTTGATTCTTCCAATTTTTTCCCAAAAGCTTTACCAGACTTTGTTAAAAGTGTTGAAATCATTGAAGGAGATGGAGGGCCAGGAACCATTAAGAAGCTCAGTCTTCCTGAAGGGTATGTGAAGCAAAAGGTGGATGTGGTGGATGAAGATAACTATGTGTATCAGTACACAATAGTTGAAGGGAATCTTCTGACAGAGCCATTGGAGAAGGTGTCTAATGAATACAAATTGGTGCCAAATTCTGATGGAGGATGCATTGTGAAGGCCACACGAAAATACTACACAAAAGGAGATGCTGAACTCACACAAGAGTTTCTCAAATCTACCAATGAGATGTCAGCAGTGTTTGCCAAGGCTGTTGATGATTATCTTTTGGCTAATCCTGATTACAACTAA 468 0.406 MGIVTTESDLVSAVAPARLYKAIVLDSSNFFPKALPDFVKSVEIIEGDGGPGTIKKLSLPEGYVKQKVDVVDEDNYVYQYTIVEGNLLTEPLEKVSNEYKLVPNSDGGCIVKATRKYYTKGDAELTQEFLKSTNEMSAVFAKAVDDYLLANPDYN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00149 155 Pfam Pathogenesis-related protein Bet v 1 family 4 151 IPR000916 GO:0006952
Vimu10g00149 155 SUPERFAMILY Bet v1-like 3 155 - -
Vimu10g00149 155 CDD Bet_v1-like 5 148 - -
Vimu10g00149 155 PANTHER - 1 153 - -
Vimu10g00149 155 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 85 117 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 FunFam Major pollen allergen Bet v 1-A 1 155 - -
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 106 122 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 81 94 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 140 150 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 PRINTS Major pollen allergen Bet V1 signature 62 81 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vimu10g00149 155 SMART Bet_v_1_2 1 151 IPR000916 GO:0006952
Vimu10g00149 155 Gene3D - 1 155 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00149 Vimu-Chr10 850263 851130 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00149 - - aprc:113852251 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00149 10 850263 851130 Vimu10g00149 10 850263 851130 ECH
Vimu10g00149 10 850263 851130 Vimu7g01754 7 16170746 16172941 PCT