Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01715 ATGGCCGCTGGACAACTATTCTCGCGTACTACACAAGCTTTGTTTTACAACTACAAGCAACTTCCCATCCAACGGATGCTTGACTTTGACTTTCTTTGTGGTAGAGAAACACCATCAGTTGCTGGAATTATTAATCCTGGTTCGGAGGGATTTCAAAAACTCTTTTTTGGTCAGGAGGAAATTGCGATCCCAGTTCATGCTGATATTGAAGCAGCTTGTGCTGCACACCCTACTGCTGACGTGTTCATCAATTTTGCATCCTTTAGAAGTGCGGCTGCATCATCCATGATTGCTTTAAAGCAGCCGACAATTAGAGTTATTGCTATTATTGCTGAAGGCGTCCCTGAGTCAGACACTAAGCAATTGATAGCGTATGCTCGGGCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTCGGAGGAATTCAAGCTGGTAGTTTTAAGATAGGTGACACTGCTGGAACAATTGACAACATAATTCAGTGCAAGCTCTACCGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCAAATGAATTATACAACACTATTGCCCGTGTGACTGATGGAATTTATGAAGGCATTGCCATTGGCGGAGATGTTTTCCCAGGTTCCACACTCTCTGACCATGTTTTGCGGTTTAACAACATACCACAGGTTAAAATGATAGTAGTACTTGGTGAGCTTGGTGGGCGAGATGAGTATTCTCTGGTGGAAGCCTTAAAACAAGGGAAAGTGACAAAGCCAGTTGTTGCCTGGGTTAGCGGAACCTGTGCAAGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCAAAAAGTGGCAGTGACACGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAAGACGCTGGAGCTGTTGTTCCCACTTCATATGAGGCTTTTGAAGCTGCAATAAAGGAAACATTTGACAAATTGGTTGGAGAAGGGAAGATCGCACCAATTAAAGAGTTTACTCCTCCACCAATTCCTGAGGACCTTAACATTGCAATTAAGAGTGGAAAAGTACGTTCTCCAACTCACATTATTTCCACCATCTCTGATGACAGAGGTGAGGAGCCCTGCTATGCTGGTGTACCCATGTCTACCATTATTGAAAATGGTTATGGTGTGGGGGATGTTATCTCTCTTTTGTGGTTCAAACGTAGCCTTCCCCGTTACTGCACTCAATTTATTGAGATATGTATCATGCTGTGTGCTGACCACGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGAAAAGACCTTGTCTCCTGTCTTGTATCGGGTAAATACTGGCCTCCAGTCTTTCTATTGCTGAATATCTGTCTTTCTACTGCTGAAGTATGCTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGGTATTTCAAGGATGCTTATGACAGGAATCTTACGCCTTATGAATTTGTTGAAAGTATGAAGAAGAAGGGCATCCGTGTTCCTGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTCGAGCTGTTACAAAAGTTTGCACGCACACATTTTCCATCTGTGAAATACATGGAGTATGCTGTTGAAGTTGAAAACTACACCCTCACCAAGGCAAATAATCTAGTTTTAAACGTAGATGGTGCAATTGGGTCGCTTTTCTTGGATCTCCTGGCTGGTAGCGGAATGTTCACCAAACAAGAGGTTGACGAAATTGTGGGGATTGGCTATCTGAATGGGCTTTTTGTTTTGGCACGCTCCATTGGTCTGATAGGGCATACCTTTGACCAAAAGAGATTGAAACAGCCACTCTACCGCCATCCATGGGAAGATGTTCTGTACACAAAATGA 1887 0.4361 MAAGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHADIEAACAAHPTADVFINFASFRSAAASSMIALKQPTIRVIAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGSFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGSDTESAQAKNQALKDAGAVVPTSYEAFEAAIKETFDKLVGEGKIAPIKEFTPPPIPEDLNIAIKSGKVRSPTHIISTISDDRGEEPCYAGVPMSTIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGKYWPPVFLLLNICLSTAEVCLLTIGPRFGGAIDDAARYFKDAYDRNLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEVDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01715 628 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Vimu7g01715 628 FunFam ATP-citrate synthase subunit 138 323 - -
Vimu7g01715 628 Pfam Citrate synthase, C-terminal domain 465 617 IPR002020 GO:0006099|GO:0046912
Vimu7g01715 628 Gene3D - 470 567 IPR016143 -
Vimu7g01715 628 Gene3D - 138 323 IPR016102 -
Vimu7g01715 628 PANTHER ATP-CITRATE SYNTHASE 5 440 IPR002020 GO:0006099|GO:0046912
Vimu7g01715 628 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Vimu7g01715 628 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Vimu7g01715 628 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Vimu7g01715 628 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Vimu7g01715 628 Gene3D - 2 137 - -
Vimu7g01715 628 CDD CCL_ACL-C 369 626 - -
Vimu7g01715 628 FunFam ATP-citrate synthase subunit 1 475 568 - -
Vimu7g01715 628 FunFam ATP-citrate synthase beta chain protein 2 137 - -
Vimu7g01715 628 SUPERFAMILY Citrate synthase 134 626 IPR036969 GO:0046912
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01715 Vimu-Chr7 15824412 15828565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01715 1 628 Acyl Lipid Metabolism Gene Families AT3G06650 89.331 0.0 1118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01715 K01648 - gmx:100801407 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01715 7 15824412 15828565 Vimu7g01715 7 15824412 15828565 ECH
Vimu7g01715 7 15824412 15828565 Vimu2g01483 2 10185926 10190717 PCT