Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01483 TTGGTCGTACAAACAATTTTAGTGAAACTCAAACTTCCTACACCAGAATTCTCTTCTGGTTTGTGTTTCTCTTCATCCTTCTACTGTCCTATTCAATCTATGGTTGCTTTAAATGCTTCTCATAGCAATCTCTGTTTCATTTCAACTCATATTTCTTCTTTTTGTTGCATATTACATTTGGGAAGGGAAACACCATCAGTTGCTGGAATCATTAACCCTGGTTCTGAAGGATTTCAAAAGATCTTCTTTGGTCAGAAGGAAATTGTCATCCCAGTTCATGCTACCATTGAAGCAGCTTGTGCTGCTCATCCTACTGCTGATGTCTTCATCAACTTTGCTTCACACACAAGTGGTGATGGATCGTCGATGTGTGCTTTGAAGCAGGCAACAATTAGAGTTGTTGCTGTGATGGGAACTGTTGGAAGCATTCAAGCAGGTGCTTTTAAAATCGGTGACACCGCTGTAACAATTGACAATATAATTCACTGCAAACTCTACAGACCTGGATCTGTTGGATTTGTTTCTAAATCTGGTCACACATTCAATGAATTATGCAACACTATTTCTCGTGTAACTGATGGGATTTATGAAGCCATTGCCATTGGAGGAGATGTTTGTCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATACCACAGATTAAAATTATGGTAGTAGTTGGAGAGGATGATGGGTGTGATGAGTATTCCATAGTGGAAGCCCTAAAACAGGGGAAAGTATCAAAGCCTGTGGTTGCCTGGGTTAATGGGAGATGTGCAGGGCCATTGAAATCTGAAGCAGAATTTGGTGAAGCAGGAGATAAAAATGGTTGTGAGATGGAGTTTGCTCGAGCAAAGAATCAGGCACTGAGAGATGCTGGAGCTGTTGTTCCCACATCATATCAAACTTTTGAAGCTGCACTTATGGAAACATTTCACAAATTGGTTGAAGAAGGTAAAATCACACCAGTCAAGGAAATCACTCCTCCTCCAATCCCTGAGGACCTCAGCTCTGCAATTAAGAGTGGGAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGAGAGGGGAGAGGATCAATGCTATGGTGGTATATCCATGTCTTCCATTATCGAAAAAGGCTATGGTGTCGGTGGTGTTATCTCTCTTTTGTGGTTTAAGCGCAGCCTTCCTCATTACTGTACTCAATTTATTGAGATGTGCATAATGCTATGTGCCGACCATGGTCCTTGTGCCTCCGGAGCTCATAATACTATCGTGACAGCAAGGGCAGGGAAGGACCTAATTTCCTGTCTTGTATCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGACGATGCTGCTCGCTACTTTAAGGATGCTCATGACAGTGGACTTAGACCTTATGAGTTTGTTGAAGGTATGAAGAAAAAGGGGATTCGTGTGCCAGGAATAGGACACAGGGTAAAGAATAAGGACAGGAAAGACAAGCGAGTTGAGCTGCTACAAAAGTTTGCAAGGACACATTTTCCTTCTGTTAAATACATGGAATATGCAGTTGAGGTTGAAGCCTACACCCTCTCCAAGGCAAAAAATTTAATTCTTAACATCGATGGTGCCATTGGGTCTATTTTCTTGGATCTTTTTGCTGGCAGTGGAATGTTCACTGAGCAAGAGGTTGATGAAATTGTGAAGATTGGGTATCTGAATGGCTTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGGCACACCTTTGACCAAAAGAGACTGAAGCAACCTCTTTATCGACACCCATGGGAGGATGTTGTCTACACAACGTGA 1830 0.4235 MVVQTILVKLKLPTPEFSSGLCFSSSFYCPIQSMVALNASHSNLCFISTHISSFCCILHLGRETPSVAGIINPGSEGFQKIFFGQKEIVIPVHATIEAACAAHPTADVFINFASHTSGDGSSMCALKQATIRVVAVMGTVGSIQAGAFKIGDTAVTIDNIIHCKLYRPGSVGFVSKSGHTFNELCNTISRVTDGIYEAIAIGGDVCPGSTLSDHVLRFNNIPQIKIMVVVGEDDGCDEYSIVEALKQGKVSKPVVAWVNGRCAGPLKSEAEFGEAGDKNGCEMEFARAKNQALRDAGAVVPTSYQTFEAALMETFHKLVEEGKITPVKEITPPPIPEDLSSAIKSGKVRAPTHIISTISDERGEDQCYGGISMSSIIEKGYGVGGVISLLWFKRSLPHYCTQFIEMCIMLCADHGPCASGAHNTIVTARAGKDLISCLVSGLLTIGPRFGGAIDDAARYFKDAHDSGLRPYEFVEGMKKKGIRVPGIGHRVKNKDRKDKRVELLQKFARTHFPSVKYMEYAVEVEAYTLSKAKNLILNIDGAIGSIFLDLFAGSGMFTEQEVDEIVKIGYLNGFFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVVYTT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01483 609 Gene3D - 140 324 IPR016102 -
Vimu2g01483 609 Gene3D - 465 550 IPR016143 -
Vimu2g01483 609 Pfam Citrate synthase, C-terminal domain 396 595 IPR002020 GO:0006099|GO:0046912
Vimu2g01483 609 SUPERFAMILY Citrate synthase 181 605 IPR036969 GO:0046912
Vimu2g01483 609 CDD CCL_ACL-C 370 607 - -
Vimu2g01483 609 Gene3D - 46 139 - -
Vimu2g01483 609 PANTHER ATP-CITRATE SYNTHASE 139 608 IPR002020 GO:0006099|GO:0046912
Vimu2g01483 609 Gene3D Citrate Synthase, domain 1 390 464 IPR016142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01483 Vimu-Chr2 10185926 10190717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01483 54 608 Acyl Lipid Metabolism Gene Families AT3G06650 76.936 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01483 K01648 - gmx:100795745 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01483 2 10185926 10190717 Vimu2g01483 2 10185926 10190717 ECH
Vimu7g01715 7 15824412 15828565 Vimu2g01483 2 10185926 10190717 PCT