Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01674 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGTGGTCGCAGCTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGAGAGTTGAAAGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGAAGAAAAGCTGTCAAAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATGAAGCCTATGGGAAATATTGCCAAAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAGTTCCTCTATTTCTTCAAGGCAGACGATATTGATGATTTTTTAGTTCTTGTTCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAAAATAATGATTCTCGTGTTCCTTCCGGTCTTTTTCCCCAAGAGTTTACCACTAAACTTAGAGCTAAAATATTTTCAACAGGGGACGTTGTGAATATTTTTGCGGGGGTGGATTACTCTTCCACCTGTGCTTTGGTGAACTACCGAGTGAAGCGATTTGTACAGGCTTGTATTCATGCTTTGCATCAGAATAGGTTTTCTCCTGTTCATGTTACATTGGTTCTGATGAACAGCGGTGGCAAGGGTCGAATTATAAGCCACCTGGTTTACAGAGGTTCTGATGTTGTGTTACTTCAAAATGGATCTGCCAACGGAAATCAGCTAAAAGGCCAGCTTTTGTTGACTCCTGAGGAGTTGAATGTATCAGCTGTTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATTCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCGAAACAATGCACTTGGCTTACTAAGAGAGGTCATTCTTACGGGGAAGGGTAATGATGCAGAAAATTATTTTTCCATTGGCAAGGGTTCATCATTGGAGCGTGTGCTTATGGCTGTAGTACGTCACGTTGGTCAGGAGCCATGCATCTGTTCACATTTTAATCCAAGATATACTTTTGCATCTCAGATCATCACAATTCCTTTTTTATGGCATCTTTTCCCTAATTTACAACAGATGTTTGCCGCAGAGGACCTGAGCCAATTTTACATGCATCAAATGGCAAAGTTTGGGCAAAATATGATCAACTTTCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCCTGTATGCTTGGAAATGTATTGGAAATTGCTGGAATTGCTTTGTCTCATCCTCTCTGTTCATTTGATATGGCAATAGACCTTGCGGCTGTCACTACAGTTTTGCTGGAGGCACTCCCATCTGCAATAACTTCCAATGGTAGAGAAAGTTCTATGAGCGGTGACGATGATATGACTGGAGATGAAGTCAAGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTAATAATGCTGTAAATCCTCGCTTCCTTCTACAACTGACAAACATACTATTTAAAGAGATTTCATCTGTCAATGGTTCAGATTATGGACCTAATGATAGAGAAGTTACTGCTGTTGATGCGGTTTGTGGGTTTTTGCATGTTACCTTCGGCAAGCTGCCACTTGAGCGAATTATGACAGTACTTGCTTACAGAACTGAACTCGTTATTACCCTTTGGAATTTTACAAAGAAGTGTCATGAGAACCAAAAGTGGTCATCACTCACCTCAAATGATGCACCCGGCTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGGACCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGGGAATCATACTACATCGTCTAATTCAGTAAAATCAGTTCCAAATAGTTCAGTTAGAAAGGGACGGTTTGTTCAGGCCATTCAACAGAGGGTTAGCATTGCAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGACGGTGTGAATGACCTATTTATCTCTCAGGCTTTAATAGAAAATACGCGAGCAAATGAAATATTGAAACAGGCCCCTTTCTTGATACCATTTACTAGCAGGGTTAAAATATACTCTTCTCAACTGGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTAGTAGGAACCGGTTCAGAATAAAACGAGACCGTATTTTAGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAAATAGTCTTCGAGGATTGATCCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCGGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCCTCCTTGGACCCGGAATTGTATCGCCATCTCATTTTTCTCAAGCATTATAAGGGAGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGGGGAAGAAACCTACGTGTCACTAATGAGAATGTTATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAGAGTTCGCATTTCTTGAGAGGATTTGAACAACTCATTCAGAAGGATTGGATCGATATGTTTAATGAACAAGAACTTCAGCTTCTGATATCAGGTTCAGTTGACAGCTTGGATATTGATGATTTACGGCTGCACACCAACTATGCAGGAGATTATCGTAGTGACCACTATGTTATTGAGATGTTTTGGGAAGTTCTTAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTCGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGAAATCTTGAACCTTTGTTTTGCATTCAAAGTGCTTCCAGTAATGCTGCGGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTGAAGCTTCCGCCTTATACAAGGTTTGTCCTGGGCTAG 3222 0.4094 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVKTEQSKLREQFYEAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADDIDDFLVLVQICRLLWWFVQNNDSRVPSGLFPQEFTTKLRAKIFSTGDVVNIFAGVDYSSTCALVNYRVKRFVQACIHALHQNRFSPVHVTLVLMNSGGKGRIISHLVYRGSDVVLLQNGSANGNQLKGQLLLTPEELNVSAVPLLEVLVLLIDSKLPWSCKIVEYLFRNNALGLLREVILTGKGNDAENYFSIGKGSSLERVLMAVVRHVGQEPCICSHFNPRYTFASQIITIPFLWHLFPNLQQMFAAEDLSQFYMHQMAKFGQNMINFLPKDISNEFPSHACMLGNVLEIAGIALSHPLCSFDMAIDLAAVTTVLLEALPSAITSNGRESSMSGDDDMTGDEVKEIALDRKLEQQINNAVNPRFLLQLTNILFKEISSVNGSDYGPNDREVTAVDAVCGFLHVTFGKLPLERIMTVLAYRTELVITLWNFTKKCHENQKWSSLTSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRTLIIILRQVLWQLLWGNHTTSSNSVKSVPNSSVRKGRFVQAIQQRVSIAVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQALIENTRANEILKQAPFLIPFTSRVKIYSSQLAAVRQRHGSQAVFSRNRFRIKRDRILEDAYNQMSQLTENSLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFEQLIQKDWIDMFNEQELQLLISGSVDSLDIDDLRLHTNYAGDYRSDHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRNLEPLFCIQSASSNAAEESLDRLPTSATCMNLLKLPPYTRFVLG 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01674 1073 CDD HECTc 728 1068 IPR000569 GO:0004842
Vimu7g01674 1073 Gene3D Hect, E3 ligase catalytic domain 972 1071 - -
Vimu7g01674 1073 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1070 IPR044611 GO:0000209|GO:0061630
Vimu7g01674 1073 MobiDBLite consensus disorder prediction 11 28 - -
Vimu7g01674 1073 Pfam HECT-domain (ubiquitin-transferase) 785 1068 IPR000569 GO:0004842
Vimu7g01674 1073 Gene3D Hect, E3 ligase catalytic domains 730 968 - -
Vimu7g01674 1073 ProSiteProfiles HECT domain profile. 749 1068 IPR000569 GO:0004842
Vimu7g01674 1073 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vimu7g01674 1073 SUPERFAMILY Hect, E3 ligase catalytic domain 718 1068 IPR035983 GO:0004842
Vimu7g01674 1073 FunFam Putative Ubiquitin-protein ligase E3C 854 933 - -
Vimu7g01674 1073 FunFam Putative Ubiquitin-protein ligase E3C 972 1071 - -
Vimu7g01674 1073 Gene3D Hect, E3 ligase catalytic domain 854 933 - -
Vimu7g01674 1073 MobiDBLite consensus disorder prediction 1 28 - -
Vimu7g01674 1073 SMART hect_3 742 1073 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01674 Vimu-Chr7 15529578 15548146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01674 K10589 - gmx:100789933 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01674 7 15529578 15548146 Vimu7g01674 7 15529578 15548146 ECH
Vimu7g01674 7 15529578 15548146 Vimu2g01444 2 9812303 9836528 PCT