Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01444 ATGTTTTTCAGCGGCGATCCTTCCACTCGTAAGCGTGTCGATTTAGGCGGTCGCAGCTCGAAAGAACGGGATAGAAAGAATCTTCTTGAGCAGACACGATTAGAGCGGAACCGGCGTTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCAAGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAGTCTAAACTACGAGAGAAATTTCTTAGCATCTATGGGCAGAACTGTCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCAGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTATGTTGAAGAGACTGGGGATGTTGTCCAACTTTTTGCTGCTGAGGACTATTTGTCCAGGTGTGCTTTGGTGAACTATCGAGTGAAGCAATTTGTATATACTTGTATTCGTGCTGTACATCATAATAGGTATCACTTGAAGGATCAGCTTTTATTAACTCTGAAGGAATCTAATGTATCGGCTATTCCTTTATTGGAGGTCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGATAGTATCAAGTCTGTCTAAAAACAGTGCATTTAGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACTGTTGTAACTTGCCACATTGGTCAGAAGCCATGTATCTGTTCACCTACTGATCCAGTATATAGCTTCTCATCACAGATCCTTTCGATTCCTTTCTTGTGGCATGTTTTTCCAAACCTAAAACAGGCTGTAGACCTTGCTTCTGTTACTACATTTTTGCTGGAATCATATCCATCTCCGACAAGATCTGATGGTAGAGAGAATTCTAAAATTGCCGATGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGTTTTGGATAGGAAATTGAATCAACAAATTTCTAATGCCATTGATACTCGCTTCCTTCTGCAACTGACAACTATATTATTTAGAGATTTTTCATCTTCAAATGGTTCAGATCATGAGCCAGAGGACAGGGAGGTTGCAGCTGTCGGTGCAGTTTGTGGATTTTTACATGTTATCTTCAACACATTGCCACTTGAAAAGATTATGACTGTACTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAACAAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCCGGCGATGCACCAGGTTGGCTGTTGCCACTTTCTGTATTCTGTCCTGTTTACAAGCATATGCTCATGATAGTTGATAATGAGGAGTATTACGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGCCTTATCACTCTGCTAAGGCAGGCTCTGTGGCAGTTATTGTGGGTGAATCATACCACGTCTGCCAATTTGGTAAAATCGGGTTCCGTCAGCACAGCAATTAAAAAGCAGTTCGAAGCTATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGAAGACAGTTTACATCACCCAGTGACTTCCATGCTGATGGGGTGAATGACTACTTTATCTCTCAGGCCATTATAGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCTCCTTTCTTGATACCATTTACTAGCAGGGCTAAAATTTTCACTTCTCAACTAGCTGCTGCTAGGCAACGACAGGGATCTCAGGCTGTTTTTACTAGAAACCGGTTCAAAATACGTCGGAATCATATTTTGGAAGATGCCTACAATCAAATGAGTCAGCTGTCAGAAGATGACCTTCGAGGACTGATTCGTGTGGCTTTTGTTAATGAATTTGGAGTTGAAGAGGCAGGAATAGATGGAGGTGGAATATTCAAAGATTTTATGGAGAACATCACACGTGCTGCATTTGATGTGCAATATGGATTATTTAAGGAGACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACTCTTCTCGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACTTTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATCTAAATGATTTGCCTTCCTTGGATCCAGAATTATATCGTCATCTTATTTTTCTTAAGCATTATGAGGGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAATGAATACGGAGAGCAAACAGAAGAGGAGCTGCTTCCACGGGGAAAGAACATCCGTGTTACTAACGAGAATGTCATTACTTTTATTCATCTAGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTCAATGAGCATGAACTTCAGCTATCATTTCTTGTGGAACCCTTGTCATTGAAAGCCTTTGGTGCTGCTGGTTGGTTATCTGTTATTGATATAGATGTTCTACTTCAAGAGCGGGAGTTACATCTATTAATGATAGATGTTCTTGCTCCTTCACCAATAACTTGTATCACACTTGAGTCCCTTAATACACCATCTATCACTTCTGATCCATCATCTTCTTACTCTATTTCTGTTCCTAATAAAGCTACACTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACTAACTATGCAGGAGGCTATCGTAGTGAGGATTATGTTATCGAGACGTTCTGGGAAGTTCTCAAAGGCTTTTCATCAGAAAACAAAAGAAACTTTTTGAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCGATATCTTGAACCTTTGTTTTGCATACAAAAGGCCGGTGGTAATGCTTCGGAGGAAGCTCTTGACCGATTACCGACATCAGCCACCTGTATGAATTTACTAAAGCTTCCACCTTATAAAAGGTTCGTTATAGTACTAGCTTGTCTTTACAGTTTGTAG 3111 0.3989 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALKIQKCFRGRKVVRTEQSKLREKFLSIYGQNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQYVEETGDVVQLFAAEDYLSRCALVNYRVKQFVYTCIRAVHHNRYHLKDQLLLTLKESNVSAIPLLEVLVLLIDPKLPWSCKIVSSLSKNSAFSLLREIILTGKDNAENCIYSEKGSSLERVLTVVTCHIGQKPCICSPTDPVYSFSSQILSIPFLWHVFPNLKQAVDLASVTTFLLESYPSPTRSDGRENSKIADDEMTGEDEVMEVVLDRKLNQQISNAIDTRFLLQLTTILFRDFSSSNGSDHEPEDREVAAVGAVCGFLHVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLSVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLITLLRQALWQLLWVNHTTSANLVKSGSVSTAIKKQFEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDYFISQAIIENTRANEILKQAPFLIPFTSRAKIFTSQLAAARQRQGSQAVFTRNRFKIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQTEEELLPRGKNIRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLSFLVEPLSLKAFGAAGWLSVIDIDVLLQERELHLLMIDVLAPSPITCITLESLNTPSITSDPSSSYSISVPNKATLLISGSLDSLDVDDLRQHTNYAGGYRSEDYVIETFWEVLKGFSSENKRNFLKFVTGCSRGPLLGFRYLEPLFCIQKAGGNASEEALDRLPTSATCMNLLKLPPYKRFVIVLACLYSL 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01444 1036 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vimu2g01444 1036 MobiDBLite consensus disorder prediction 1 22 - -
Vimu2g01444 1036 FunFam Putative Ubiquitin-protein ligase E3C 928 1035 - -
Vimu2g01444 1036 Pfam HECT-domain (ubiquitin-transferase) 665 844 IPR000569 GO:0004842
Vimu2g01444 1036 Gene3D Hect, E3 ligase catalytic domain 734 813 - -
Vimu2g01444 1036 ProSiteProfiles HECT domain profile. 629 1023 IPR000569 GO:0004842
Vimu2g01444 1036 Pfam HECT-domain (ubiquitin-transferase) 908 1025 IPR000569 GO:0004842
Vimu2g01444 1036 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 295 844 IPR044611 GO:0000209|GO:0061630
Vimu2g01444 1036 FunFam Putative Ubiquitin-protein ligase E3C 734 813 - -
Vimu2g01444 1036 SUPERFAMILY Hect, E3 ligase catalytic domain 600 845 IPR035983 GO:0004842
Vimu2g01444 1036 CDD HECTc 608 1024 IPR000569 GO:0004842
Vimu2g01444 1036 Gene3D Hect, E3 ligase catalytic domain 928 1033 - -
Vimu2g01444 1036 SUPERFAMILY Hect, E3 ligase catalytic domain 915 1026 IPR035983 GO:0004842
Vimu2g01444 1036 Gene3D Hect, E3 ligase catalytic domains 610 844 - -
Vimu2g01444 1036 SMART hect_3 627 1029 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01444 Vimu-Chr2 9812303 9836528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01444 K10589 - gmx:100787467 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01444 2 9812303 9836528 Vimu2g01444 2 9812303 9836528 ECH
Vimu7g01674 7 15529578 15548146 Vimu2g01444 2 9812303 9836528 PCT