Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01673 ATGGCTTCTCTTGTTCTTCAATTCACTGCTCTCAAGTGCTCTCCACTCTCTTCTTCTTTTCTCTCCCAACCTTCCCTTTTCACCCAACAGCGCCATAACCAAAGGCGCGCTTCAACTTCCATTGTCAACTCTGTAGCATTGGCCAATGCACAGAACAAAGAGAGAGTCAAGCTCAAGAAGCTCTTCGAAGAAGCCTACGAGAGATGTCGTACTGCTCCCATGGAAGGGGTCTCCTTCACCCTCGAAGATTTCACTGCTGCTCTCGACAAGTATGATTTTGATTCTGAAGTTGGCTCCAAGGTTAAAGGTACTGTGTTCTACACGGATAACAATGGAGCAGTTGTTGACATCACTGCAAAGTCCTCGGCGTATTTGCCGCTGCAGGAAGCGAGCATCCGCAAGGTTAAGCACGTGGAAGAGGCGGGCATAGTTGCTGGGTTGAGAGAGGAGTTTTTGATCATTGGTGAGAATCAAGCGGATGATAGCTTGATCTTGAGTTTAAGGTCGATTCAGTATGATCTTGCATGGGAACGTTGCAGGCAGCTTCAGGCAGAAGATGCTGCTGTCAAGGGTAAGATTGTGGGGGTCAACAAAGGTGGAGTGGTGGCTGAGGTTGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAATTGTCAACGAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTAATCGCAAGGCCATAGCTGGCAACCAAGCACAGCTAGGAATTGGTTCAGTGGTTACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGTCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATCTCAACTGTTCTTCAACCTGGCGACATATTAAAGGTGATGATCTTGAGTCATGACCGTGAGAGAGGTCGAGTAAGTCTTTCAACTAAGAAGTTAGAGCCTACGCCTGGAGACATGATCCGCAATCCAAAGATTGTCTTTGAGAAGGCTGAGGAGATGGCTCAAACCTTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCGGTGATGGGATCCTGGGACAATTTACTTCAGACTTGCCTGAAGAGGGACTAGATCTGACTGAGGTGCCACCAGCTGAAGAATCATGA 1242 0.4742 MASLVLQFTALKCSPLSSSFLSQPSLFTQQRHNQRRASTSIVNSVALANAQNKERVKLKKLFEEAYERCRTAPMEGVSFTLEDFTAALDKYDFDSEVGSKVKGTVFYTDNNGAVVDITAKSSAYLPLQEASIRKVKHVEEAGIVAGLREEFLIIGENQADDSLILSLRSIQYDLAWERCRQLQAEDAAVKGKIVGVNKGGVVAEVEGLRGFVPLSQLSTNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKIVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGQFTSDLPEEGLDLTEVPPAEES 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01673 413 PRINTS Ribosomal protein S1 signature 189 205 IPR035104 -
Vimu7g01673 413 PRINTS Ribosomal protein S1 signature 98 116 IPR035104 -
Vimu7g01673 413 PRINTS Ribosomal protein S1 signature 116 130 IPR035104 -
Vimu7g01673 413 PRINTS Ribosomal protein S1 signature 234 254 IPR035104 -
Vimu7g01673 413 MobiDBLite consensus disorder prediction 390 413 - -
Vimu7g01673 413 Pfam S1 RNA binding domain 184 248 IPR003029 GO:0003676
Vimu7g01673 413 Pfam S1 RNA binding domain 262 331 IPR003029 GO:0003676
Vimu7g01673 413 FunFam 30S ribosomal protein S1 82 179 - -
Vimu7g01673 413 SUPERFAMILY Nucleic acid-binding proteins 93 193 IPR012340 -
Vimu7g01673 413 FunFam 30S ribosomal protein S1 259 338 - -
Vimu7g01673 413 FunFam 30S ribosomal protein S1, chloroplastic 180 256 - -
Vimu7g01673 413 CDD S1_RPS1_repeat_hs4 263 331 - -
Vimu7g01673 413 ProSiteProfiles S1 domain profile. 263 331 IPR003029 GO:0003676
Vimu7g01673 413 Gene3D - 81 178 IPR012340 -
Vimu7g01673 413 ProSiteProfiles S1 domain profile. 186 250 IPR003029 GO:0003676
Vimu7g01673 413 PANTHER 30S RIBOSOMAL PROTEIN S1 25 400 - -
Vimu7g01673 413 ProSiteProfiles S1 domain profile. 98 168 IPR003029 GO:0003676
Vimu7g01673 413 SMART S1_6 184 250 IPR022967 -
Vimu7g01673 413 SMART S1_6 261 331 IPR022967 -
Vimu7g01673 413 SMART S1_6 96 168 IPR022967 -
Vimu7g01673 413 SUPERFAMILY Nucleic acid-binding proteins 185 253 IPR012340 -
Vimu7g01673 413 Gene3D - 258 335 IPR012340 -
Vimu7g01673 413 SUPERFAMILY Nucleic acid-binding proteins 262 341 IPR012340 -
Vimu7g01673 413 Gene3D - 179 257 IPR012340 -
Vimu7g01673 413 Coils Coil 348 368 - -
Vimu7g01673 413 CDD S1_RPS1_repeat_ec2_hs2 186 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01673 Vimu-Chr7 15524722 15527697 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01673 K02945 - gmx:100812847 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01673 7 15524722 15527697 Vimu7g01673 7 15524722 15527697 ECH
Vimu7g01673 7 15524722 15527697 Vimu2g01442 2 9792102 9796072 PCT