Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01641 ATGGCTTCCCTTTCTCTCTCCTTTTCTTCTTCCATTGTTCCCTCTTCAATTCCTCACCACAAATCCACCAAAATCCACACTCAAGACTCCACTTTTAGGGTTACCTGCTTCGCCATTTCCTCTCCCCCCTCCAAACCCGTTGTCAAAAAGCGACACTGGAAAAAAGGTGAATTTCCTGGTACTTCTGAAACATCGTTAGACGATAGTACGAGGAGGACCCCCATCAAGAACATCAAGAGGAAGTTGGAGAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAGTCCTTATCTGAACAAATCGACAAGAAGCAGTGGCTTCAGGCCCTTCAGGTATTTGATATGCTTAGAGAACAAACTTTCTACAAGCCTAAAGAAGGGGCGTATATGAAACTCATTGTGCTGCTTGGAAAATCTGGTCAACCCCACCGCGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTCATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTCATTGATGAAGCTTTTTCAGTTCTTAATGAGATGAAGAGGCTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGTTATTGTATGAAGAAATGGCTGAAAGGTCCATCACACCAAACACGGTGACTCAGAACATCGTTTTGGGTGGTTATGGTAAGGCGGGGAAGTTTGATCAGATGGAGAAAGTGCTTTCCAGCATGCTGGAGAGCACTACCTGCAAGCCTGATGTTTGGACAATGAACACCATCATTAGTGTCTTTGGTAACAAGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTTGGGATAGAACCTGAAACGCGCACTTTTAACATTTTGATTGGCGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGCAAGTTGCAATTTCCATGGACAACCTCGACCTATAACAATGTGATTGAGGCATTTGCCGATGCTGGTGACGTGAGGCACATGGAGTGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCACTTTCATAAAGTAATTAGCAGTGTTCAATTGGCTGGAAAGTTTGAGATACCTGAGAATGTTGCCTTTTATAACGCAGTCTTATCTGCATGTGCAAAGGCAGATGATTTGATGGAAATGGAAAGAGTTTTTAAGCGTATGAAAGATAACCAATGTCAACCGGACGAAACAACATACATGATCATGATTGAAGCATATAGAAAAGACGGTATGAATGACAAAATATACTATTTGGAACAGGAAAAACAGACAATGATAACTGACAATAAAATAGTGAGCCATTCTGAGGATGAGATCTTTTGTTCAGATAGCTAA 1482 0.4177 MASLSLSFSSSIVPSSIPHHKSTKIHTQDSTFRVTCFAISSPPSKPVVKKRHWKKGEFPGTSETSLDDSTRRTPIKNIKRKLEKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLREQTFYKPKEGAYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPHLYTALLAAYCRSNLIDEAFSVLNEMKRLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSITPNTVTQNIVLGGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNKGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDVRHMECTFDQMRAEGMKADTKTFCCLINGYANAGHFHKVISSVQLAGKFEIPENVAFYNAVLSACAKADDLMEMERVFKRMKDNQCQPDETTYMIMIEAYRKDGMNDKIYYLEQEKQTMITDNKIVSHSEDEIFCSDS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 413 445 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Vimu7g01641 493 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vimu7g01641 493 Gene3D Tetratricopeptide repeat domain 336 400 IPR011990 GO:0005515
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vimu7g01641 493 MobiDBLite consensus disorder prediction 47 69 - -
Vimu7g01641 493 MobiDBLite consensus disorder prediction 1 24 - -
Vimu7g01641 493 Pfam PPR repeat family 340 387 IPR002885 -
Vimu7g01641 493 Pfam PPR repeat family 409 455 IPR002885 -
Vimu7g01641 493 Pfam PPR repeat family 165 209 IPR002885 -
Vimu7g01641 493 Pfam PPR repeat family 268 315 IPR002885 -
Vimu7g01641 493 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01641 493 PANTHER EXPRESSED PROTEIN 29 472 IPR044179 GO:0003729
Vimu7g01641 493 Gene3D Tetratricopeptide repeat domain 92 262 IPR011990 GO:0005515
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Vimu7g01641 493 Gene3D Tetratricopeptide repeat domain 401 474 IPR011990 GO:0005515
Vimu7g01641 493 Gene3D Tetratricopeptide repeat domain 263 335 IPR011990 GO:0005515
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Vimu7g01641 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vimu7g01641 493 Pfam PPR repeat 131 159 IPR002885 -
Vimu7g01641 493 Pfam PPR repeat 238 263 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01641 Vimu-Chr7 15260920 15263103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01641 125 470 Glycosyltransferase AT1G05670 24.148 2.85e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01641 - - gmx:100786610 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01641 7 15260920 15263103 Vimu7g01641 7 15260920 15263103 ECH
Vimu7g01641 7 15260920 15263103 Vimu10g00559 10 4605489 4607749 PCT